Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0119 ATGGGTCCTCCTGCTGATGAATACCTTGAAACAAAGGAGATGGATGAGAGAAGTATGTCATCTTCACATGGTCACGCACCACACGTCCACAAAGTGGCAATTCCTCCGAGACAGAACCTCTTCAAGGAATTCCAAGCCACTATAAAAGAAACATTCTTTGCTGATGATCCTCTAAGATCCTTCAAAGATCAACCTAAATCAAAGAAGATCATTCTTGGTATTGAGGCCATATTCCCAATACTTAATTGGGGGAGAAGTTACAACCTTAAAAAGTTTAGGGGTGATATTATATCTGGTCTCACTATAGCAAGTCTTTGCATTCCTCAGGATATTGGATACGCCAAGCTTGCACATTTGGATCCTCAGTATGGACTGTACTCTAGCTTTGTTCCACCATTGATTTATGCTGTGATGGGTAGTTCTCGTGATATTGCAATAGGACCAGTGGCTGTGGTTTCTCTCTTGTTGGGGACCTTACTTAGTAATGAGATTGATCCTGCTAAACATGCAGAAGAATATCGGCGACTTGCTTTTACAGCCACCTTTTTTGCTGGAATTACTCAAGCAACGCTTGGTGTTCTTAGGTTAGGATTCTTGATTGACTTTCTATCCCATGCTGCTATTGTCGGTTTTATGGGGGGTGCTGCCATCACAATTGCCCTTCAGCAGCTAAAGGGTTTCCTTGGCATTAAAAGTAAATTGTTCACAACAAAAACTGATATTGTATCGGTGCTGCGTTCAGTATTTTCAACAGCCCATCATGGATGGAACTGGCAAACTATAGTCATCGGAGCTAGTTTTTTGGGTTTTCTTCTGCTCGCCAAATATATTGGAAAGAAGAACAAGAGATTCTTCTGGGTTCCAGCAATTGCTCCATTGATATCCGTGGTATTGTCCACCTTTTTTGTATTCATAACCCGCGCAGATAAGCAAGGAGTAGAAATAGTAAGACACATACATAAAGGGATCAACCCATCATCTGTTAAAGAACTATATTTTAACGGTCAATACCTTGGGAAAAGTTTCAGAATTGGCGTCGTGGCAGGCATGATAGCATTGACCGAAGCCACGGCAATTGGAAGAACATTTGCATCTATGAAGGACTATCAACTGGATGGAAACAAAGAAATGGTGGCATTGGGAGCAATGAATGTTGTTGGTTCGATGACTTCCTGTTATGTGGCAACTGGTTCTTTCTCTCGGTCAGCGGTAAATTTCATGGCTGGCTGCCAAACTGCAGTCTCTAACATTGTGATGTCAGCAGTTGTGTTCTTAACCCTGCAATTCATCACTCCTCTTTTTAAGTACACTCCAAGTGCCATTCTTTCAGCCATCATAATTTCTGCTGTCATCAACCTTGTGGACTATCAGGCAGCAATTTTAATTTGGAAGATAGATAAAATTGATTTTATTGCCTGCATGGGAGCATTCTTTGGGGTTGTTTTTCTCTCCGTTGAGAAAGGACTTCTAATTGCTGTCTCTATATCCTTTGCAAAGATCCTACTACAAGTCACAAGGCCCAGAACTGCTATTCTGGGGAATATTCCTCGGACTTCTGTCTATAGAAACATCCAACAATATCCAGAAGCTAGTAAGGTTCCAGGTGTACTGATTGTAAGAGTCGATTCTGCAATATATTTTTCCAACTCCAATTATGTTAAAGAAAGGATATTAAGATGGCTGATGGATGAAGAAGAACAAGTGAAAGGAGACTACCACACAAAAATCCAGTTTTTGATAGTTGAAATGTCACCCGTTACTGACATCGATACCAGTGGAATCCAAGCCTTTGAAGAGTTACACAGAAGTCTTGAGAAGAGGGGTGTTGAGCTTGTTCTTGCAAATCCTGGCCCCGCAGTGACAAACAAGCTTTACACATCCAATTTTGCACACACGATTGGCGAGGACAAGATCTTCCTCACTGTTGCAGAGGCTGTATCATACTGTTCTCCAAAGCTGGCTGAGTACCCATGA 1974 0.4164 MGPPADEYLETKEMDERSMSSSHGHAPHVHKVAIPPRQNLFKEFQATIKETFFADDPLRSFKDQPKSKKIILGIEAIFPILNWGRSYNLKKFRGDIISGLTIASLCIPQDIGYAKLAHLDPQYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLSNEIDPAKHAEEYRRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKSKLFTTKTDIVSVLRSVFSTAHHGWNWQTIVIGASFLGFLLLAKYIGKKNKRFFWVPAIAPLISVVLSTFFVFITRADKQGVEIVRHIHKGINPSSVKELYFNGQYLGKSFRIGVVAGMIALTEATAIGRTFASMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCQTAVSNIVMSAVVFLTLQFITPLFKYTPSAILSAIIISAVINLVDYQAAILIWKIDKIDFIACMGAFFGVVFLSVEKGLLIAVSISFAKILLQVTRPRTAILGNIPRTSVYRNIQQYPEASKVPGVLIVRVDSAIYFSNSNYVKERILRWLMDEEEQVKGDYHTKIQFLIVEMSPVTDIDTSGIQAFEELHRSLEKRGVELVLANPGPAVTNKLYTSNFAHTIGEDKIFLTVAEAVSYCSPKLAEYP* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0119 657 ProSiteProfiles STAS domain profile. 526 649 IPR002645 -
Apr1g0119 657 Pfam Sulfate permease family 92 474 IPR011547 GO:0016021
Apr1g0119 657 Pfam STAS domain 527 645 IPR002645 -
Apr1g0119 657 SUPERFAMILY SpoIIaa-like 528 650 IPR036513 -
Apr1g0119 657 CDD STAS_SulP_like_sulfate_transporter 527 642 - -
Apr1g0119 657 ProSitePatterns SLC26A transporters signature. 121 142 IPR018045 GO:0008271|GO:0008272
Apr1g0119 657 PANTHER HIGH AFFINITY SULFATE TRANSPORTER TYPE 1 12 657 - -
Apr1g0119 657 PANTHER SULFATE TRANSPORTER 12 657 IPR001902 GO:0015301|GO:0016020|GO:0055085
Apr1g0119 657 Gene3D STAS domain 506 653 IPR036513 -
Apr1g0119 657 TIGRFAM sulP: sulfate permease 79 645 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0119 Apr-Chr1 1314376 1319295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0119 4 655 Inorganic Solute Cotransporters AT1G22150 75.000 0.0 980
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0119 K17470 - gmx:100804208 1142.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0119 1 1314376 1319295 Apr1g0119 1 1314376 1319295 ECH
Apr9g0909 9 17493609 17500016 Apr1g0119 1 1314376 1319295 PCT