Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0109 ATGGCAGCTATGATGGATTTTTACACCAGCGCACAATTTCACTCAGATCCCTTCAGGGGTGAACTAATGGAAGTTCTTGAACCTTTTATAAAAAGTCCTTCCTCAACCCCCTCTCCTTCTTCTTCTCCTTCTACAAACTCATATCTACCTTCTACTTCTTTCTTCCCCTCTTCTCCTTCTCTCCCTAGTTTCTACACAGATGGTTGCTCAACATCGATGGCCCATGTATTTGCAGAAGGGTTATCAAACAGCCAAAACCTAATAGGCTTCGAGCAACCAAGCTCTGTGCTTGGCCTCAACCACCTAACCCCATCTCAGATCGCACAGATCCAGGCTCAATTCCAGTTTCAGAATATATCATGGCAGCAACAGCAGAATCACAACACCCTAAGCTTCCTCAGTCCAAAGCCAATCCCAATGAAGCACGTGGGCATGCCTCCAAAACCCACAAAGCTTTACAGAGGGGTTAGGCAAAGACACTGGGGAAAATGGGTCGCTGAGATCAGACTCCCAAAGAACCGCACAAGGCTCTGGCTGGGAACCTTTGACACTGCCGAAGAAGCTGCTCTGGCTTACGACAAAGCCGCTTACAAGCTCCGAGGTGACTTTGCTAGGCTCAACTTCCCCAACCTCCGACACCAAGGATCCTCTGTCGGTGGAGACTTCGGGGAGTACAAGCCTCTTCATTCCTCTGTTGATGCCAAGCTTCAAGCCATTTGCGAAGGCTTGGCTGAGTTGCAGAAACAGGGGAAGTCAGAGAAGCCTTCGGGCTCTTCCAAAAGGTCGCGATCGAAGCTTCCTCCGCCTGAGAATGTTGAAGCTTCCTTGTCTCCGGTTGCGACCGAGAGCGAGGGCTCTGAAGGTTCTTCTCCCCTTTCGGATCTTACTTTTGCTGATGTGAGTGAACCACAGTGGGAAGGTGATTCGGATAATTTTAATCTCCATAAGTACCCCTCTTATGAGATCGACTGGGATTCTCTGTGA 984 0.4919 MAAMMDFYTSAQFHSDPFRGELMEVLEPFIKSPSSTPSPSSSPSTNSYLPSTSFFPSSPSLPSFYTDGCSTSMAHVFAEGLSNSQNLIGFEQPSSVLGLNHLTPSQIAQIQAQFQFQNISWQQQQNHNTLSFLSPKPIPMKHVGMPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAELQKQGKSEKPSGSSKRSRSKLPPPENVEASLSPVATESEGSEGSSPLSDLTFADVSEPQWEGDSDNFNLHKYPSYEIDWDSL* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0109 327 MobiDBLite consensus disorder prediction 31 49 - -
Apr1g0109 327 PRINTS Ethylene responsive element binding protein signature 153 164 IPR001471 GO:0003700|GO:0006355
Apr1g0109 327 PRINTS Ethylene responsive element binding protein signature 175 191 IPR001471 GO:0003700|GO:0006355
Apr1g0109 327 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 326 - -
Apr1g0109 327 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 326 - -
Apr1g0109 327 Pfam AP2 domain 153 201 IPR001471 GO:0003700|GO:0006355
Apr1g0109 327 MobiDBLite consensus disorder prediction 247 327 - -
Apr1g0109 327 Gene3D AP2/ERF domain 152 210 IPR036955 GO:0003700|GO:0006355
Apr1g0109 327 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677
Apr1g0109 327 CDD AP2 151 211 IPR001471 GO:0003700|GO:0006355
Apr1g0109 327 ProSiteProfiles AP2/ERF domain profile. 152 209 IPR001471 GO:0003700|GO:0006355
Apr1g0109 327 MobiDBLite consensus disorder prediction 30 49 - -
Apr1g0109 327 MobiDBLite consensus disorder prediction 276 297 - -
Apr1g0109 327 SMART rav1_2 152 215 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0109 Apr-Chr1 1210979 1212813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0109 1 327 AP2-EREBP Transcription Factor Family AT1G78080 56.000 2.13e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr1g0109 AP2 7.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0109 K09286 - gmx:100800478 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0109 1 1210979 1212813 Apr1g0109 1 1210979 1212813 ECH
Apr9g0918 9 17658680 17660607 Apr1g0109 1 1210979 1212813 PCT