Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0107 ATGACGAACCAAAATGTGGTGGCTCCTGATGTTATTAACACGCTTATGCTGACAGTGCCCGATTCCCTGGCTGTGCTTGGTGGGTTTTGGAGCTTGCCCCATAAGAATCTTATGAGAAGGTTGGAAGGAGCTAAAGTTAGTGCTTGGATTGATTCAATGAGAGCTTCTTCCCCAACTCGTGTAAAATCAGAAAACCAAGAAAAACGATCTTGGATTCTTTATCATCCTTCAGCGCTGAACGTGTTTGATCAGATAATATGCAATTCCAAAGGAAAGCAGATTGTGGTTTTTCTTGACTACGATGGAACTCTCTCCCCTATTGTTTCAGATCCAGAAAAAGCTTTCATGTCTAGAAAGATGAGAGCCACGCTAAAGGGCATAGCAAGACATTTTCCCACAGCCATCGTGACGGGAAGGTGCAGAGACAAGGTGTATAGCTTTGTAAAATTGGCAGAACTGTACTATGCTGGAAGCCATGGCATGGACATCACTGGACCAACAAAAAGCCAAAGCCCAAAGAAAGGTAATAATAAAGCAGTGCTGTTTCAACCTGCGAGTCAATTCCTGCCCATGATCGACGAGGTGTACAAGATCTTGCTAGAAAAAACAAAGTCTGTCCCAGGGGCTACGGTTGAGAACAATAAGTTTTGCTTGTCCGTGCACTTCCGTTGTGTTGACGAAAAGAGCTGGGCAACGTTGGCGGAGAAAGTTAGATTGGTGCTCAATGAATACCCACAACTTAGGCTAACCCAAGGGAGAAAAGTGCTTGAGATCCGTCCAACAATCAAATGGGACAAGGGCAAGGCTCTTGAATTTTTGTTAAAATCGTTAGGATACGAGAATTCTAATGACGTATTCCCAATCTATATCGGTGATGATCGAACTGATGAGGATGCTTTTAAGGTTTTGCGCAGTAGGGGTCAAGGAATTGGGATTCTCGTTTCTAGAGTTCCAAAAGAAACAGATGCTTCCTACACCTTGCAAGATCCATCAGAGGTCGAGCAATTCTTGCGGCGTTTGGTGGAGTGGAAAAGATCGAGTAGTGTAAGTCCAAAAAGTGCATAG 1065 0.4394 MTNQNVVAPDVINTLMLTVPDSLAVLGGFWSLPHKNLMRRLEGAKVSAWIDSMRASSPTRVKSENQEKRSWILYHPSALNVFDQIICNSKGKQIVVFLDYDGTLSPIVSDPEKAFMSRKMRATLKGIARHFPTAIVTGRCRDKVYSFVKLAELYYAGSHGMDITGPTKSQSPKKGNNKAVLFQPASQFLPMIDEVYKILLEKTKSVPGATVENNKFCLSVHFRCVDEKSWATLAEKVRLVLNEYPQLRLTQGRKVLEIRPTIKWDKGKALEFLLKSLGYENSNDVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSRVPKETDASYTLQDPSEVEQFLRRLVEWKRSSSVSPKSA* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0107 354 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 18 351 IPR044651 GO:0004805|GO:0005992
Apr1g0107 354 SUPERFAMILY HAD-like 95 343 IPR036412 -
Apr1g0107 354 Gene3D - 196 352 IPR023214 -
Apr1g0107 354 Gene3D - 94 187 IPR023214 -
Apr1g0107 354 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 18 351 - -
Apr1g0107 354 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 96 305 IPR006379 -
Apr1g0107 354 CDD HAD_TPP 95 333 - -
Apr1g0107 354 TIGRFAM T6PP: trehalose-phosphatase 92 341 IPR003337 GO:0003824|GO:0005992
Apr1g0107 354 Pfam Trehalose-phosphatase 97 331 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0107 Apr-Chr1 1191572 1193621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0107 90 340 Trehalose Biosynthesis Gene Families AT1G70290 26.199 2.04e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0107 K01087 - gmx:100788641 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0107 1 1191572 1193621 Apr1g0107 1 1191572 1193621 ECH
Apr9g0920 9 17687584 17690252 Apr1g0107 1 1191572 1193621 PCT