Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0094 ATGGGAAGGTCCCCATGCTGCGATGAGAATGGCCTTAAGAAAGGACCCTGGACTCCTGAAGAAGACCAAAAGTTAGTTCAGCATATCCAGAAACATGGCCATGGAAGTTGGAGAGCACTCCCTAAGCTAGCCGGTCTCAACAGATGTGGGAAAAGTTGTAGGCTAAGGTGGACCAACTATCTAAGGCCTGACATCAAGAGGGGGAAGTTTTCTCAAGAAGAGGAGCAAACAATTCTGCATCTCCATTCCATCCTTGGAAACAAATGGTCAGCAATTGCAACCCATCTTCCAGGCAGGACGGATAATGAGATCAAAAATTTCTGGAATACTCATTTAAAGAAAAAGTTGATTCAGATGGGTTTTGATCCAATGACACACCAACCTAGAACTGACCTTGTTACGAGCTTGCCATATCTGCTAGCTTTGGCCAACATGACAGACCTTATGGATCATCAGTCATTGGATGAACAAGCTGTGAGGTTACAAGCAGAGGCAGTTCAGCTAGCAAAGCTTCAATACCTTCATTATCTATTCCAATCCTCAAACTCCTTAAGTACCAACTCCTATGACCAAAATGCCACCACAAGCATGGAACCTTACAGTTTGTTAAACTCAATCTCTAATGTGAAAGAGAATCCAGTGATAGACTGCTTGCAACCAGATACTCCAGTCTCATTTTCTCATGGCATTGCTAGCTCCCAACCACTCCACCACCCAAGCGTGCTACCTCACTTTTTAGACCCACAAGTCTCTTTCAGTTCCCAATCATGTTTGAATAGTGAGCAAGGTCAAGGTACCAACTTTGCAGTGGTAAGTCAAGGGGATCACACTGCTGATCATGACTCATCCTGGATTATTCCATCCCCTGCTCCATCTATTCCTCCAAATGTGATAGGGACCTCAGCTAGCAATCCAGGAGATGCCAGCAGCAGCACTTCTAGTTATGGAGGAGGACCCTCATCTTATTGGTGTGAACTATTCTTTGAGGACCCCATAATGCATGATCTATCTTAG 1014 0.4467 MGRSPCCDENGLKKGPWTPEEDQKLVQHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVTSLPYLLALANMTDLMDHQSLDEQAVRLQAEAVQLAKLQYLHYLFQSSNSLSTNSYDQNATTSMEPYSLLNSISNVKENPVIDCLQPDTPVSFSHGIASSQPLHHPSVLPHFLDPQVSFSSQSCLNSEQGQGTNFAVVSQGDHTADHDSSWIIPSPAPSIPPNVIGTSASNPGDASSSTSSYGGGPSSYWCELFFEDPIMHDLS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0094 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr1g0094 337 CDD SANT 69 112 IPR001005 -
Apr1g0094 337 MobiDBLite consensus disorder prediction 279 316 - -
Apr1g0094 337 CDD SANT 16 61 IPR001005 -
Apr1g0094 337 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr1g0094 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr1g0094 337 Gene3D - 13 66 - -
Apr1g0094 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr1g0094 337 Gene3D - 69 116 - -
Apr1g0094 337 Coils Coil 151 171 - -
Apr1g0094 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr1g0094 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr1g0094 337 MobiDBLite consensus disorder prediction 295 316 - -
Apr1g0094 337 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 262 - -
Apr1g0094 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr1g0094 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 262 - -
Apr1g0094 337 SMART sant 13 63 IPR001005 -
Apr1g0094 337 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0094 Apr-Chr1 1046379 1047981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0094 1 337 MYB Transcription Factor Family AT1G34670 56.873 4.99e-123 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr1g0094 Myb_DNA-binding 5.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0094 K09422 - gmx:100811162 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0094 1 1046379 1047981 Apr1g0094 1 1046379 1047981 ECH