Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0086 ATGAGTGAGACAGCAAGTCTTCATGCACAAACGAGGACACCCATTTCTTCTTTGGATGCCATGCCTCATCACCACCCACATTATCGATCACAGTTCGGAGACACCACATTCACCAAATTGTTTGTTGGAGGACTAGCCTGGGAAACTCCCACCGAAGAAATGCGCAAATATTTCCAACAGTTCGGAGACATTCTTGAAGCTGTCATAATCACTGACAAGAACACAGGAAAATCCAAAGGCTACGGATTCGTAACATTCTGCGATCAGGAATCAGCAAGAAAGGCATGTGCTGATCCAAACCCAGTAATAGATGGAAGAAGAGCAAATTGTAATATTGCTTCTCTAGGAAGGACTCGACCATCGCCACCCCGAGGAAGGAATATAGTTCAAGGTGGAGGAGGAACAGCACAGGCTGGGGGGTCGTACAGTGGTGTTCCGGGAGCAGGACCACCATCACTGCCACCACCACCTCCTGTTCTGTACCCACCATATGGCTATACAACCTACACTCCTGATTATGGATACCCCCAAGCCACGTTGTACAACCCACAGATTCAGCAACCACAATACTATCAACAACTCTATGGAACATCATCTTCCACCATGGGCTCACCATATTACTATGGTTATTCTGTACAAGCACCAAGAAACACATTTTCTTCACCACAAGCAAATCGACTATCACCTGGACCATCCTATGTATACTACCCTACACCCATGGAAATCTCTTTCTCTGGATTTCGTCCACCCCAACAATCACCAATAAGCCAACTCTTTCCTTCCCCAAATGATTCACAGAGTCAGCAGCGTACCTCTGAAACAGCAGCCGGGGTAGTTGTAACTTCAGAAAGTTCAAATACCCAAGGGAAGAATTAA 876 0.4623 MSETASLHAQTRTPISSLDAMPHHHPHYRSQFGDTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARKACADPNPVIDGRRANCNIASLGRTRPSPPRGRNIVQGGGGTAQAGGSYSGVPGAGPPSLPPPPPVLYPPYGYTTYTPDYGYPQATLYNPQIQQPQYYQQLYGTSSSTMGSPYYYGYSVQAPRNTFSSPQANRLSPGPSYVYYPTPMEISFSGFRPPQQSPISQLFPSPNDSQSQQRTSETAAGVVVTSESSNTQGKN* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0086 291 MobiDBLite consensus disorder prediction 246 291 - -
Apr1g0086 291 PANTHER GEO13361P1-RELATED 24 281 - -
Apr1g0086 291 MobiDBLite consensus disorder prediction 114 157 - -
Apr1g0086 291 PANTHER - 24 281 - -
Apr1g0086 291 Gene3D - 6 135 IPR012677 -
Apr1g0086 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 97 IPR000504 GO:0003723
Apr1g0086 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Apr1g0086 291 CDD RRM_RBM24_RBM38_like 38 113 - -
Apr1g0086 291 MobiDBLite consensus disorder prediction 1 22 - -
Apr1g0086 291 SUPERFAMILY RNA-binding domain, RBD 24 142 IPR035979 GO:0003676
Apr1g0086 291 MobiDBLite consensus disorder prediction 1 17 - -
Apr1g0086 291 SMART rrm1_1 39 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0086 Apr-Chr1 952696 956935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0086 34 114 C2H2 Transcription Factor Family AT2G19380 38.272 6.05e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0086 K25006 - gmx:100811977 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0086 1 952696 956935 Apr1g0086 1 952696 956935 ECH
Apr9g0939 9 18044350 18048627 Apr1g0086 1 952696 956935 PCT