Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0079 ATGGAATCTCAGAGTCAGAGAGATCGCAGAACAGAGGCTCTCGGAGATCTTCGAGCGCTTCCCGACGAAATCCTCTGCGCTATTTTGGAACGTCTCACTCCCCGCGATGCTGCTCGCCTCGCTTGCGTTAGCAGTGTTATGTACATACTGTGCAATGAAGAACCACTGTGGATGAGTCTTTGCCTAAAAGGAGCTTCTGGTTTGCTTCAATACAAAGACTCTTGGAAGAAAACTGCCCTGCATAATGAGAATCTGCCAGACAAATACAAGGAGTACCATCGTGGACCTTTATATTTTGATGATAACGGAAATGTGGAAAGAATAAAAGACATCTCACTGCAGGACTTCTATAATGAGTATGATGCAAAGAAGCCGGTTATGCTTACTGGATTGGCTGACACATGGCCTGCCAGGGATAAATGGACAATTGACCAATTGTTGCTAAACTATGGAGATGTAGCGTTTAAAATTTCTCAAAGGAGTTCCCGGAAGATCTCCATGAAGTTCAAGGATTATGTCTCATACATTAAAGTTCAGCATGATGAAGATCCCTTATATATTTTTGATGAAAAGTTTGGTGAAGTTGCACCTAGCTTATTGAAGGATTATAGTGTGCCTCATCTTTTTCAAGAAGATTTCTTCGACATCTTAGATACAGATAAACGACCTTCCTATAGGTGGCTCATAATCGGACCAGAGAGATCTGGTGCTTCTTGGCATGTTGATCCAGCTCTTACCAGTGCATGGAATACTCTTCTTGTTGGCCGTAAAAGGTGGGCATTATATCCTCCAGGAAAAGTGCCTTTGGGTGTCACAGTGCATGTTAATGAAGAAGATGGTGATGTCAATGTTGACACTCCGTCATCACTGCAGTGGTGGCTAGATTTTTATCCTCTTCTTGCTGATGAAGACAAGCCAATTGAATGCACACAACTACCTGGAGAAACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTGCTAAATTTGGAAACAACTGTTGCTGTCACGCAGAATTTTGTAAATTCTAGCAACTTTGAATTTGTATGTTTGGATATGGCACCTGGTTATCGTCATAAAGGAGTTTGCCGTGCTGGGTTGCTTGCTCTTGATGAAGATAGTTATGAAAATGTCAAGCAGAACATGTCATGTGATGAAAAAGACTTCGGTTACTCGAATTTTTCCAGGAAAGAGAAAAGAGCCAAAACTCAGAAAGATGTAGATGATCTAAGTTACCAAAGAGCCATGAATGGTGCATCTAGAAGCTACAATTTATGGAAAGATGGATTTTCTTATGATGTAAATTTCTTGTCCTTGTTTTTGGATAAAGACAGAGACCACTACACTTCACTGTGGAGCTCAGGCAATAGCATTGGTCAGCGAGAACTAAGAGAATGGTTATCCAAACTCTGGATTCAAAAACCAAAAATGAGAGAGCTGATATGGAAGGGAGCATGTATTGCACTAAATGCTGACAAGTGGTTACAATGCCTATCATATATTTGTGCTTTCCACAAGTTGCCCCCTCCCACTGATGATGAAAGGCTTCCAGTTGGTACGGGTAGCAATCCTGTATATTTAGTCGGAAACTCTGTTCTTAAGATTTTTGTTGAAGGAGGATTGGAAGCTTCACTTTATGGTTTAGGCACAGAGCTAGAGTTTTACAGTATGTTGCACGAGGTCAATTCCCCTCTCAGGAAACATATTCCTAATGTTTTGGCCACTGGGATTATCTATATTGAAGATGGATCTTATACCATTTTAAGTTGGGATGGGAAAGGAGTCCCTGATGTCATTGTTAAGAGCAATCTGATCAGGAAGAACTGTGATGTTGACGGTTTCTCATTTGGGGTATGGGGCAAGAAAGAATTAGAGTATCGGAATGCTGGAATGTCGGTGGATGAATCTGCTGGCTTAGCTGGTCACTCATGCATATGGCCATATATGATAACAAAACGATGTGAGGGGAATATGTTTGCAGAGTTAAGAGACAGATTAACATGGGAAGACATAACAAACTTGGCCTCCTTCTTGGGGGAGCAGCTGTGTCATCTTCATCTTTTGCCATATCCACCTTTAAATATTTCATATTTCTCTGATATTGAACATGAATTAAGCTTGGCTGAGGCTAATGGTTGTATTGCAACTGTTGGTTGTAAATCAAATGCTGCAGCAGAATGGGAAGTCTTCACTAGAACTTTAACAAAGAAGATGAAGGGTCTGTCAAGCCGTTTGACCAAGTGGGGGGATCCAATTCCTAAGAAACTGATAGATAAAATTGATGAATATATCCCACCTGATTTTGCTCAGCTGCTAAATATGGATGAGAATTCGGGAACTGGTGCTTGTAAACCTTGCTCCTGGATACACAAGGATATTATGGATGACAACATTTACATGGAACCATCATCGGTTTGCTTGACCTCTAGTAGGAATACTGAAGATACTGCCCAGGTGGACAGTGGTTTGTTGCACAACTATGATGAAGTGAAATTGTGGCGTCCTAGTCATATTCTTGATTTCAGTGATGTTTCGATTGGTGATCGTCTTTTTGACTTGATACCAATTTATTTAGATGTGTTTAGAGGAGATTCGTATCTTCTTAAGCATTTTTTAGAAAGTTACAGACTTCCTTTTGCTAGTAACATATCAAAGTACGAGTCAACAGAGGGTGGTCAGAAGTTTGGCCGACTTTCATATGTTGCCATGTGCTATTGTATCTTGCATGATGAGAATGTCTTGGGGGCTATTTTTAGCATTTGGGAAGAACTGAGATCAGCAAAGTCATGGGAAGAAGTTGAGCAGACAGTGTGGGGAGAATTGAACAATTACAGAGGCTTTCCTTGA 2847 0.4092 MESQSQRDRRTEALGDLRALPDEILCAILERLTPRDAARLACVSSVMYILCNEEPLWMSLCLKGASGLLQYKDSWKKTALHNENLPDKYKEYHRGPLYFDDNGNVERIKDISLQDFYNEYDAKKPVMLTGLADTWPARDKWTIDQLLLNYGDVAFKISQRSSRKISMKFKDYVSYIKVQHDEDPLYIFDEKFGEVAPSLLKDYSVPHLFQEDFFDILDTDKRPSYRWLIIGPERSGASWHVDPALTSAWNTLLVGRKRWALYPPGKVPLGVTVHVNEEDGDVNVDTPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTVAVTQNFVNSSNFEFVCLDMAPGYRHKGVCRAGLLALDEDSYENVKQNMSCDEKDFGYSNFSRKEKRAKTQKDVDDLSYQRAMNGASRSYNLWKDGFSYDVNFLSLFLDKDRDHYTSLWSSGNSIGQRELREWLSKLWIQKPKMRELIWKGACIALNADKWLQCLSYICAFHKLPPPTDDERLPVGTGSNPVYLVGNSVLKIFVEGGLEASLYGLGTELEFYSMLHEVNSPLRKHIPNVLATGIIYIEDGSYTILSWDGKGVPDVIVKSNLIRKNCDVDGFSFGVWGKKELEYRNAGMSVDESAGLAGHSCIWPYMITKRCEGNMFAELRDRLTWEDITNLASFLGEQLCHLHLLPYPPLNISYFSDIEHELSLAEANGCIATVGCKSNAAAEWEVFTRTLTKKMKGLSSRLTKWGDPIPKKLIDKIDEYIPPDFAQLLNMDENSGTGACKPCSWIHKDIMDDNIYMEPSSVCLTSSRNTEDTAQVDSGLLHNYDEVKLWRPSHILDFSDVSIGDRLFDLIPIYLDVFRGDSYLLKHFLESYRLPFASNISKYESTEGGQKFGRLSYVAMCYCILHDENVLGAIFSIWEELRSAKSWEEVEQTVWGELNNYRGFP* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0079 948 SUPERFAMILY Clavaminate synthase-like 102 349 - -
Apr1g0079 948 Pfam Cupin-like domain 122 343 IPR041667 -
Apr1g0079 948 SUPERFAMILY F-box domain 6 65 IPR036047 GO:0005515
Apr1g0079 948 Gene3D Cupin 69 342 - -
Apr1g0079 948 SUPERFAMILY Protein kinase-like (PK-like) 646 878 IPR011009 -
Apr1g0079 948 SMART cupin_9 185 352 IPR003347 -
Apr1g0079 948 Pfam F-box-like 18 63 IPR001810 GO:0005515
Apr1g0079 948 SMART fbox_2 20 60 IPR001810 GO:0005515
Apr1g0079 948 ProSiteProfiles JmjC domain profile. 194 357 IPR003347 -
Apr1g0079 948 Gene3D - 3 58 - -
Apr1g0079 948 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 2 881 - -
Apr1g0079 948 PANTHER JMJC DOMAIN-CONTAINING PROTEIN 8 2 881 - -
Apr1g0079 948 ProSiteProfiles F-box domain profile. 14 60 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0079 Apr-Chr1 899697 908942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0079 1 944 Glycosyltransferase AT1G78280 60.184 0.0 1170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Apr1g0079 Cupin_8 2.8e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0079 - - gmx:100792541 1701.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0079 1 899697 908942 Apr1g0079 1 899697 908942 ECH