Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0065 ATGAAAACGCTAACTGTTAAAACTGAAGATTCTTTTTCCAGTTTGCTGGAACTTGCTTCTAACAATGACATTGAAGGTTTCAAGATTCTTGTAGATAAGGATTCTTCTTCGATCAATGAAGTTGGGCTCTGGTATGGCCGTAAGAATGGATCAAAGCAAATTGTTCTTGAGCATAGAACCCCTTTGATGGTTGCTGCTACGTACGGTAGCATCGATGTTCTGAAGCTTATACTGTCGTGCCCAGAGGCAGATGTGAATCTTGCCTGTGGGGTGAATAAAAGCACTGCCCTTCACTGTGCTGCTTCTGGTGGGTCTGTTAATGCAATTGATGCTGTGAAGCTTCTTCTATTAGCCGGTGCTGATGTGAATTGCGTGGATGTGAATGGTAATCGCCCTGTTGATGTTATTGTTGTTCCTCTCAAGATGCGAGGGATGAAAACTATTCTTGAGGAGCTTCTTTCAGACAACGCTTCTGATGGCTCTGTTGGTGAATTCTATGTTCGGGTGTCTTTTAATTCTTCCAGTCCTGTTTCTCCTGCACATTCATCAAATGGAATGCCATACTCTCCTTCAGGCTCGCCGCCATCTCCTGTGGCTTCGAAGTTTAGTGATGCAGCTATTGGCTCTTTGTTTGAGAAGAAAGAATATCCAATTGATCCGTCAGTTCCTGATATAAAAAACAGCATATATGCAACAGATGAGTTTCGGATGTTTTCGTTCAAGGTGAGACCTTGTTCCCGGGCATACTCACATGATTGGACTGAGTGTCCATTTGTCCATCCTGGGGAGAATGCTCGAAGGAGGGACCCAAGGAAGTTCCATTACAGCTGTGTGCCATGCCCTGATTTTAGGAAAGGGGCTTGTAGACGTGGAGATATGTGTGAATATGCACATGGAGTATTTGAGTGCTGGCTACACCCAGCTCAGTATCGGACACGCCTCTGCAAAGATGGCACCAGTTGCAATAGAAGGGTGTGTTTTTTCGCTCACACTGCAGAGGAGCTGCGTCCACTGTATGTTTCCAGTGGATCTGCTGTCCTTTCACCCCGATCATCTGCTGCCTCAGCCCCAAACGTCATGGACATGGCTGCTGTAATGGGCCTTTTGCCGGGTTCACCATCCTCGGTCTCGTCCTTGTCCCCATCCCACTTTGCCCAGCCGATGTCTCCGTCTGCAAATTGCATGTCACTTTCTTCTGCTGCTTGGGCACAACCAAATGTGCCAGCTCTTCATTTACCAGGAAGCAATCTTCAATCTAGTAGGTTGAGGTCTTCCCTTAGTGCTCGTGACATTCCACCAGAACACTTGAATTGTTTGCCTGATTTTGATGGACAGCAGCACCCTTTGAATGACTTGAGCTGTTTCTTACAGCCTCGAACTGGTGCTGTTTCAGTGAGTAGACCTGGCCGGTCCAAGACACTGACTCCGTCAAATCTGGAAGAGCTTTTTCCTTCTGAGGTTTCTTCATCTCCCCGGTATTCTGACCTAGCAATGACTTCTCTGTTTTCCCCTACACACAAATCAGCCGTTCTCAATCAGTTTCAACAGCTGCAGTGTGTGTTATCGCCTTTAAATACAGATGTTCTCTCTCCTAGGAATGTTGAGCATTCTATGCTACAGACTTCATTTGGTGTTTCTCCTTCTGGAAGGATGTCTCCAAGAAGTGTTGAACCAATCTCCCCAATGAGTGCTCGCTTATCTGCATTTGCTCAACGCGAGAAGCAGCAGCAACAGCTGCGCAGTATTAGTTCAAGGGAACTTGGTGCTTATAGTCCCGCCTCAATTGTTGGCTCCCCTATAAACAGTTGGTCTAAGTGGGGTTCCCCTAATGGAAAAGTTGATTGGTCAGTAAATGGAGATGATGTTGGTCATCAGATGCAAAAATCATCCTCATTTGAGTTTAAAAACAATGGGGAAGAGCCTGATCTATCCTGGGTCCAATCTCTGGTGAAGGAATCTCCACCTGAGATGATCAAAGAGAACTTTGCATCTTCTGAACCTGCTGCATCTGCTGATGGACTGAATTCCAATTCCCAAATTGAACCCATTGATCATTCTGTTTTAGGAACTTGGCTGGAGCAAGTGCAACTGGATCAGCTTGTAGTCTAG 2109 0.4595 MKTLTVKTEDSFSSLLELASNNDIEGFKILVDKDSSSINEVGLWYGRKNGSKQIVLEHRTPLMVAATYGSIDVLKLILSCPEADVNLACGVNKSTALHCAASGGSVNAIDAVKLLLLAGADVNCVDVNGNRPVDVIVVPLKMRGMKTILEELLSDNASDGSVGEFYVRVSFNSSSPVSPAHSSNGMPYSPSGSPPSPVASKFSDAAIGSLFEKKEYPIDPSVPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSSGSAVLSPRSSAASAPNVMDMAAVMGLLPGSPSSVSSLSPSHFAQPMSPSANCMSLSSAAWAQPNVPALHLPGSNLQSSRLRSSLSARDIPPEHLNCLPDFDGQQHPLNDLSCFLQPRTGAVSVSRPGRSKTLTPSNLEELFPSEVSSSPRYSDLAMTSLFSPTHKSAVLNQFQQLQCVLSPLNTDVLSPRNVEHSMLQTSFGVSPSGRMSPRSVEPISPMSARLSAFAQREKQQQQLRSISSRELGAYSPASIVGSPINSWSKWGSPNGKVDWSVNGDDVGHQMQKSSSFEFKNNGEEPDLSWVQSLVKESPPEMIKENFASSEPAASADGLNSNSQIEPIDHSVLGTWLEQVQLDQLVV* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0065 702 Gene3D - 274 337 - -
Apr1g0065 702 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 700 - -
Apr1g0065 702 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Apr1g0065 702 Gene3D - 1 174 IPR036770 -
Apr1g0065 702 SMART ANK_2a 92 124 IPR002110 GO:0005515
Apr1g0065 702 SMART ANK_2a 57 87 IPR002110 GO:0005515
Apr1g0065 702 SMART ANK_2a 10 40 IPR002110 GO:0005515
Apr1g0065 702 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Apr1g0065 702 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Apr1g0065 702 PANTHER UNKEMPT FAMILY MEMBER 1 700 IPR045234 -
Apr1g0065 702 Coils Coil 702 702 - -
Apr1g0065 702 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Apr1g0065 702 SUPERFAMILY Ankyrin repeat 7 159 IPR036770 -
Apr1g0065 702 Pfam Ankyrin repeats (3 copies) 19 126 IPR002110 GO:0005515
Apr1g0065 702 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Apr1g0065 702 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0065 Apr-Chr1 741940 745960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0065 9 699 C2H2 Transcription Factor Family AT5G12850 53.380 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr1g0065 Ank_2 6.2e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0065 - - gmx:100791328 1155.58