Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0063 ATGAGGAAGCCTGATCTGATGGGCAAAGACAAAATGAACAACATTAAGAGCAAGTTGAGGAAAGGGCTGTGGTCACCAGATGAAGATGAGAAGTTGATAAGGTACATGTTAACAAATGGACAAGGGTGTTGGAGTGACATTGCTAGGAATGCTGGTCTTCAAAGATGTGGCAAAAGTTGTCGCCTTCGTTGGATTAATTACTTGAGACCTGACCTCAAACGTGGTGCATTTTCACCCCAAGAGGAAGACCTCATCATTCATTTGCATTCCATTCTAGGCAACAGGTGGTCTCAAATTGCAGCACGACTCCCTGGTCGCACAGACAATGAGATAAAGAATTTTTGGAACTCCACATTGAAGAAAAGGTTGAAAACTAACCCTTGCACACCATCACTAAACATTAGTACTGACTCATCAGAGTCTAAAGATCATGTTATGAGTGGGATCATGCCCATTAATGAGCATGACCTCATGACCATGTGCATGGATTCCTCTTCATCAATGTCATCCATGCATGCAGTGGATTTTGTTGATCAATTAGATCCCTTTCCCATGTTGATAAATAATCAATATGACATGACTAGTATTTCAGCTGATTTTCCCAACATGCCTACATGCTTGACCCAAATTGGCATGGTAGATGGGCATCAAGGAAATTATGGCATATTGGAGCCAAATAAAATGGGGTTAGGAAGAGACTTCACCCTTCCTTCACTAGAAAGTAGATGCACTGAAAGCAATTGTGCCCCAATTGATGTGAAAAGCCATAACAACCTCTTCAATTATGATTCCTTAAATAGCACTAGTAAGACTCAGGGTTCCAAACTAGAGGACTTGTTTGGGTTTGGAAATCATGAGCAAGGAGAAAGTTTGAAAATGGGAGAATGGGATTTGGGGAATTTGATGCAAGATATAACATCTTTTCCTTTCCTTGATTTTTAA 942 0.4055 MRKPDLMGKDKMNNIKSKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKTNPCTPSLNISTDSSESKDHVMSGIMPINEHDLMTMCMDSSSSMSSMHAVDFVDQLDPFPMLINNQYDMTSISADFPNMPTCLTQIGMVDGHQGNYGILEPNKMGLGRDFTLPSLESRCTESNCAPIDVKSHNNLFNYDSLNSTSKTQGSKLEDLFGFGNHEQGESLKMGEWDLGNLMQDITSFPFLDF* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0063 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Apr1g0063 313 PANTHER MYB DOMAIN PROTEIN 55 1 313 - -
Apr1g0063 313 Pfam Myb-like DNA-binding domain 74 118 IPR001005 -
Apr1g0063 313 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Apr1g0063 313 CDD SANT 76 119 IPR001005 -
Apr1g0063 313 Gene3D - 18 74 - -
Apr1g0063 313 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Apr1g0063 313 CDD SANT 24 68 IPR001005 -
Apr1g0063 313 Gene3D - 75 147 - -
Apr1g0063 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Apr1g0063 313 PANTHER TRANSCRIPTION FACTOR MYB83 1 313 - -
Apr1g0063 313 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Apr1g0063 313 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Apr1g0063 313 SMART sant 20 70 IPR001005 -
Apr1g0063 313 SMART sant 73 121 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0063 Apr-Chr1 715842 717549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0063 1 313 MYB Transcription Factor Family AT3G08500 46.910 1.07e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr1g0063 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0063 K09422 - gmx:100784755 525.013