Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0061 ATGAATGATGGTAGACAAATGGGGGTGCATTACGTAGATGCTGGTTTTCCTTATGCCGTTAATGAGAACTTCGTGGATTTCTTTCAAGGCTTCACGCAGGTGCCGGTGAATTATGCCTTTGCTGGCTCAATGCCTAATCAGGAGAGTGTCTATTGGTCAATGAACATGAATCCCTATAAATTTGGATTGTCTGGGCCTGGGAGTACATCCTATTATAGTTCTTATGAGGTAAATGGTCATTTGCCAAGAATGGAGATTGACAGGGTTGAGTTTGAGTGGGAATACCCTTCAACAATGACCACTGTGGAACCAGCTACAACTAATTCTCCACCTAGAAGAGATGGAGTCACGAGCATGCAAACTATCCCTGAAGAATACAGTCCAAATCATGCAAACCTTTTAAGCAGTCCGAATCATCAGGAATCTAATAGTAGCCAGGTCATATGGCAAGACAACATTGACCCTGATAATATGACTTATGAGGAACTTCTGGACCTGGGGGAAGCAGTTGGGACTCAAAGCCGAGGTCTTTCCCAAGAACTCATTGATATGCTTCCAACCTCAAAGTACAAATTTGGTAGCTTATTCAAAAGAAAAAATTTTGGGAAAAGGTGCGTAATCTGTCAGATGACATATAGAAGAGGTGATCAGCAAATAAAATTGCCTTGCAGCCATGTCTATCATGGTGAGTGCATTACCAAGTGGCTTGGCATTAACAAGAAATGTCCTGTTTGCAACATTGAGGTTTTTGGTGAGGAATCATCGCATTAG 771 0.4202 MNDGRQMGVHYVDAGFPYAVNENFVDFFQGFTQVPVNYAFAGSMPNQESVYWSMNMNPYKFGLSGPGSTSYYSSYEVNGHLPRMEIDRVEFEWEYPSTMTTVEPATTNSPPRRDGVTSMQTIPEEYSPNHANLLSSPNHQESNSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGSLFKRKNFGKRCVICQMTYRRGDQQIKLPCSHVYHGECITKWLGINKKCPVCNIEVFGEESSH* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0061 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 250 IPR013083 -
Apr1g0061 256 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 256 IPR033276 GO:0004842|GO:0016567|GO:0046621
Apr1g0061 256 Pfam Ring finger domain 204 246 IPR001841 -
Apr1g0061 256 ProSiteProfiles Zinc finger RING-type profile. 205 246 IPR001841 -
Apr1g0061 256 SMART ring_2 205 245 IPR001841 -
Apr1g0061 256 SUPERFAMILY RING/U-box 204 250 - -
Apr1g0061 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 1 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0061 Apr-Chr1 698627 704579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0061 9 256 C3H Transcription Factor Family AT3G63530 52.016 1.29e-91 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0061 K19045 - gmx:100785290 463.766