Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0059 ATGACAGATCCTCACTCCAATTTATTCCATGAATGGTTCAACTTCATGCTCCTTCACCCTCACTACTATTCTTCTTCCCAACCCTACCCTCTTGGTAATTACTCAAACAACAGGTTTGGAATTCAATTACATGAAGCCTCATCGTCCTCTTATGCAGCTCCTCCTCCTCCTTCTCCTCCTCTAAGAGAGGCCCTTCCTCTCATAAACAAGATAAGCCTCCCAAATCAGCAGCAAAATGAACCCTCAAACATTATAGAAGCTGAGAACAACAAAGATGAGAGTCTCTTGCAATTGACTGCTACTGCTGAAGAAGGTGATGATGAAACTGTGACAGTTGCCCTACACATAGGGCTTCCAAGAATGGATACTTCTTCTTCTGATCTGGGCTCATCAAGGGTGGTCTCAACTTGTATGGAAATGGGTGAAAAAGAGGAAGTAAACATCATTTCTGAACAACCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCTCAAATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCTAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTGAAAGGAACACAACCAACAGCTATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACCCTTCAAACACATTATAAGAGAAAGCATGGCATAAAACCCTACATGTGTAGAAAATGTAGCAAAGCATTTGCAGTGAAAGGTGATTGGAGGACACATGAGAAGAACTGTGGCAAAGTATGGTATTGTTTATGTGGGTCTGATTTCAAGCACAAGAGGTCCCTAAAAGACCACATCAAAGCCTTTGGTTATGGTCACGGGGCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCTGCCTCCGAAATTGAACATGATGGGGAAAGTTCATTGTGA 1017 0.4297 MTDPHSNLFHEWFNFMLLHPHYYSSSQPYPLGNYSNNRFGIQLHEASSSSYAAPPPPSPPLREALPLINKISLPNQQQNEPSNIIEAENNKDESLLQLTATAEEGDDETVTVALHIGLPRMDTSSSDLGSSRVVSTCMEMGEKEEVNIISEQPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCSKAFAVKGDWRTHEKNCGKVWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAASEIEHDGESSL* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0059 338 Pfam C2H2-type zinc finger 177 196 - -
Apr1g0059 338 ProSitePatterns Zinc finger C2H2 type domain signature. 179 199 IPR013087 -
Apr1g0059 338 SUPERFAMILY beta-beta-alpha zinc fingers 246 281 IPR036236 -
Apr1g0059 338 Gene3D Classic Zinc Finger 176 199 - -
Apr1g0059 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 204 IPR013087 -
Apr1g0059 338 PANTHER ZINC FINGER PROTEIN WIP2 1 333 IPR043584 GO:0003700|GO:0010468
Apr1g0059 338 Gene3D Classic Zinc Finger 240 310 - -
Apr1g0059 338 SUPERFAMILY beta-beta-alpha zinc fingers 173 199 IPR036236 -
Apr1g0059 338 SMART c2h2final6 261 281 IPR013087 -
Apr1g0059 338 SMART c2h2final6 177 199 IPR013087 -
Apr1g0059 338 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0059 Apr-Chr1 669889 672366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0059 1 331 C2H2 Transcription Factor Family AT3G57670 54.400 9.36e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr1g0059 zf-C2H2_6 2.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0059 - - gmx:100794446 579.326