Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr1g0059 | ATGACAGATCCTCACTCCAATTTATTCCATGAATGGTTCAACTTCATGCTCCTTCACCCTCACTACTATTCTTCTTCCCAACCCTACCCTCTTGGTAATTACTCAAACAACAGGTTTGGAATTCAATTACATGAAGCCTCATCGTCCTCTTATGCAGCTCCTCCTCCTCCTTCTCCTCCTCTAAGAGAGGCCCTTCCTCTCATAAACAAGATAAGCCTCCCAAATCAGCAGCAAAATGAACCCTCAAACATTATAGAAGCTGAGAACAACAAAGATGAGAGTCTCTTGCAATTGACTGCTACTGCTGAAGAAGGTGATGATGAAACTGTGACAGTTGCCCTACACATAGGGCTTCCAAGAATGGATACTTCTTCTTCTGATCTGGGCTCATCAAGGGTGGTCTCAACTTGTATGGAAATGGGTGAAAAAGAGGAAGTAAACATCATTTCTGAACAACCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCTCAAATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCTAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTGAAAGGAACACAACCAACAGCTATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACCCTTCAAACACATTATAAGAGAAAGCATGGCATAAAACCCTACATGTGTAGAAAATGTAGCAAAGCATTTGCAGTGAAAGGTGATTGGAGGACACATGAGAAGAACTGTGGCAAAGTATGGTATTGTTTATGTGGGTCTGATTTCAAGCACAAGAGGTCCCTAAAAGACCACATCAAAGCCTTTGGTTATGGTCACGGGGCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCTGCCTCCGAAATTGAACATGATGGGGAAAGTTCATTGTGA | 1017 | 0.4297 | MTDPHSNLFHEWFNFMLLHPHYYSSSQPYPLGNYSNNRFGIQLHEASSSSYAAPPPPSPPLREALPLINKISLPNQQQNEPSNIIEAENNKDESLLQLTATAEEGDDETVTVALHIGLPRMDTSSSDLGSSRVVSTCMEMGEKEEVNIISEQPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCSKAFAVKGDWRTHEKNCGKVWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAASEIEHDGESSL* | 339 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr1g0059 | 338 | Pfam | C2H2-type zinc finger | 177 | 196 | - | - | |
Apr1g0059 | 338 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 179 | 199 | IPR013087 | - | |
Apr1g0059 | 338 | SUPERFAMILY | beta-beta-alpha zinc fingers | 246 | 281 | IPR036236 | - | |
Apr1g0059 | 338 | Gene3D | Classic Zinc Finger | 176 | 199 | - | - | |
Apr1g0059 | 338 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 177 | 204 | IPR013087 | - | |
Apr1g0059 | 338 | PANTHER | ZINC FINGER PROTEIN WIP2 | 1 | 333 | IPR043584 | GO:0003700|GO:0010468 | |
Apr1g0059 | 338 | Gene3D | Classic Zinc Finger | 240 | 310 | - | - | |
Apr1g0059 | 338 | SUPERFAMILY | beta-beta-alpha zinc fingers | 173 | 199 | IPR036236 | - | |
Apr1g0059 | 338 | SMART | c2h2final6 | 261 | 281 | IPR013087 | - | |
Apr1g0059 | 338 | SMART | c2h2final6 | 177 | 199 | IPR013087 | - | |
Apr1g0059 | 338 | PANTHER | ZINC FINGER PROTEIN WIP2-LIKE | 1 | 333 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr1g0059 | Apr-Chr1 | 669889 | 672366 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr1g0059 | 1 | 331 | C2H2 Transcription Factor Family | AT3G57670 | 54.400 | 9.36e-125 | 361 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Apr1g0059 | zf-C2H2_6 | 2.7e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr1g0059 | - | - | gmx:100794446 | 579.326 |