Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0054 ATGGCTCAGAAGGCAGAGAAGAACGAAACCGATTTCAAGGTCCCTGAAACCATCACCCCCTGCAGCACCAACCCCGCCACCATTCCAGAACCTTCTAGATTCTTCGACGCATCCACCACCGCTCCCGCCGCGTCATCGCGCTCCCCCAAGAGACCCCTCCCTCCTCAAGACCCCTTGCAAACCGATCAAGCCCCGTCCTCCGAGCCCAAGCGCGCCGTCAACCGCTGCTCCGGCTGCCGCCGACGTGTTGGCCTAACCGGATTCCGTTGCCGGTGCGGCGAACTCTTCTGCGCCGAGCATCGCTACTCCGACCGACACGACTGCTCCTACGACTACAAAGCCGCAGGAAGAGAAGCCATCGCCAGAGAAAACCCCGTCGTCAAAGCCGCGAAGATCGTCAAAGTTTGA 408 0.6078 MAQKAEKNETDFKVPETITPCSTNPATIPEPSRFFDASTTAPAASSRSPKRPLPPQDPLQTDQAPSSEPKRAVNRCSGCRRRVGLTGFRCRCGELFCAEHRYSDRHDCSYDYKAAGREAIARENPVVKAAKIVKV* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0054 135 Pfam AN1-like Zinc finger 76 113 IPR000058 GO:0008270
Apr1g0054 135 MobiDBLite consensus disorder prediction 1 73 - -
Apr1g0054 135 PANTHER AN1-TYPE ZINC FINGER PROTEIN 44 135 - -
Apr1g0054 135 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 38 - -
Apr1g0054 135 MobiDBLite consensus disorder prediction 15 29 - -
Apr1g0054 135 ProSiteProfiles Zinc finger AN1-type profile. 70 116 IPR000058 GO:0008270
Apr1g0054 135 PANTHER AN1-LIKE ZINC FINGER PROTEIN 1 38 - -
Apr1g0054 135 PANTHER AN1-LIKE ZINC FINGER PROTEIN 44 135 - -
Apr1g0054 135 SMART AN1_Zf_4 76 113 IPR000058 GO:0008270
Apr1g0054 135 Gene3D - 53 131 IPR035896 -
Apr1g0054 135 SUPERFAMILY AN1-like Zinc finger 59 129 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0054 Apr-Chr1 641809 643214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0054 74 135 C2H2 Transcription Factor Family AT3G52800 66.129 6.25e-28 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0054 - - gmx:100787421 209.149