Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0051 ATGAGTGTTATGTATAGTCATGCTGTAAAGTACTCTGAAAGAGACACAAAGATGGACTCAGAAATGGGTTCAAATATTGGTCACTCACAAGAACGTTGTCACCAACACAATTCTGGACTAATGCGGTACCGTTCTGCCCCAAGCTCATTGCTCACAAGCCTTTTGGAAGACGACAATAACAACATTGGTGGCGTGAACGATGAAGCTTTTAGAAGTGAGCATCATCAACATCAGCAGCAGCATTACCCTTCTTCCACAAGTTCAGAAATGGAGACCATGTTGGCCAGGTTGGTTTCTTCAAACAATGGGTTGTCAAATTTGGAGCCTTCGGCAGTGAAGCAAGAAGCAGGGGACTCTGTTTCACAACAACACAATGGTTACTCTTATGGGTCTTCATCTCAGTTACTTTACCAACCTCAACAGCCAAATGGTTCCTTAGGTGCTTTTGATGATGGATCATTCAGTGCTTTGAGCTCCATAGCTTCTTCACATAACTCCACACAAACTAAGATGGGTACTTCCACCAATTGCTCCAATCTCGTTAGGCAGAAGAGTTCCCCTGCCGGGTTTTTCAACAGTTTTTCAGTTGATAATGCATTGAGAGAGGTGGGAAGTTTTAGGGCCTGTGATGTCACAAATGGACAGGCTATAACATCCACTAGTGGGTTGCATGGTACTTTGAACTTCTCATCTAGGCCATCCTCTTGCTCTAGCCGAATGCCACAGATTGCTGAAAATGGACATGAAGGCTTGGAAGCAAATTGTGTTGAAAATAGAAACCTGGGAAATGATAATGCCAGCACTAAATGTTACATGCCCAGTTTCACCAGTAACATGTGGGATGATTCTACATTCAGTGCTCCCAAAACGGCTACTAACAATGGTGAAATCGTGTTTTCCACTTCTCATGTTTTGGACACTCAGGGTGTAGACTTTGGATATCAAAAAGTTGGTTTGACCCACCATTTGAGTCTCCCTAGCTCCTCTTCTAAGATGGCTACTATGGAAAAGATTTTCCAAATTCAAGGATCGGTTCCATGTAAAATTCGTGCCAAAAGAGGCTTTGCTACTCACCCAAGAAGCATTGCAGAGAGGGAAAGAAGAACACGAATTAGTGCAAGAATCAAGAAATTGCAAGACCTGTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGACATGCTGGATTTGGTAGTTGAGTACATTAAAGACCTGAAGAAACAAGTTAAGATACTCGCAGATACAAGGGCAAAGTGCACTTGTACGAGTAATCAGAAGCAATACTCTAGACCTTGTGCCTGA 1302 0.4286 MSVMYSHAVKYSERDTKMDSEMGSNIGHSQERCHQHNSGLMRYRSAPSSLLTSLLEDDNNNIGGVNDEAFRSEHHQHQQQHYPSSTSSEMETMLARLVSSNNGLSNLEPSAVKQEAGDSVSQQHNGYSYGSSSQLLYQPQQPNGSLGAFDDGSFSALSSIASSHNSTQTKMGTSTNCSNLVRQKSSPAGFFNSFSVDNALREVGSFRACDVTNGQAITSTSGLHGTLNFSSRPSSCSSRMPQIAENGHEGLEANCVENRNLGNDNASTKCYMPSFTSNMWDDSTFSAPKTATNNGEIVFSTSHVLDTQGVDFGYQKVGLTHHLSLPSSSSKMATMEKIFQIQGSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLVVEYIKDLKKQVKILADTRAKCTCTSNQKQYSRPCA* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0051 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 405 IPR011598 GO:0046983
Apr1g0051 433 Pfam Helix-loop-helix DNA-binding domain 361 405 IPR011598 GO:0046983
Apr1g0051 433 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 30 425 - -
Apr1g0051 433 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 425 - -
Apr1g0051 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 417 IPR036638 GO:0046983
Apr1g0051 433 Gene3D - 357 428 IPR036638 GO:0046983
Apr1g0051 433 SMART finulus 361 411 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0051 Apr-Chr1 614749 618025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0051 38 411 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 35.101 4.37e-46 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g0051 HLH 5.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0051 - - gmx:100795896 591.652