Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0050 ATGAAGAGAAACGTAAAAGAATTGTGGCAATCCACCAAAACAATTACTGTTAGTCAGACAAGGAAGACAGAGTTCAAAACAATTCAAAGTGCCATTGATTCTGTCCCTTCGGGAAACTCTCAGTGGATTCACATTCGAATTACTCCTGGTGTTTACAAAGAACACATCCTAATTCCCATGGACAAACCATGCATTTATCTTGAAAGGGCTGGTAGAAAATCCACCAGTGTTGAATGGGGTGACCCCCTTACACGTAATGCTACTTTGAATGTGAAAGCTAATAACACTGTTGCAAAGGGCATTACTTTCACGAATACACACAACAACCCTGTAATAATGGAGAAAACTAGAATCACACAAGCCAAGGCAGCTCGGATCCATGCAGATAAATGTGCTTTCTTGGATTGTGCATTTCTAGGAGTGCAAGACACCCTATACGATTCTTATGGACGGCATTACTATCATAATTGCTACATTCAAGGTGGAATCGATTTCATATATGGGAGTGGTCAATCAATCTTTGAGGCAAGTACAATAAACTTTTCAATGGGAAATTCTGGTGTCAAAATAAATGGAGTTTTTACAGCACAAGAAAGGGAATCACCAGATGATCCAAGTGGATTTGTGTTTAAAAACTGTAACATAACTGGCTCAGGAGGAAAGGCTATACTTGGAAGATCCTTCACAGCTTATGCGAGAGTCATCATAGTCAATTCATTCCTATCAGATGTAGTTTCACCAGAAGGATGGAATGCTCGTTCCTTTGTTGGCCATGAGGAAACCATCATGTTTGTTGAAGAGGGAAATAGAGGACCAGGAGCAAATAAGTCCAAGCGTGTTCAGTGGATAAAGGACTTAAGAGGAGCAGCACTTGATCATTTCTTAAATATCACTTACATTGATGAAGAAGGGTGGATTGCCAAATTGCCAACAAAGATCTTCATTTGA 948 0.3977 MKRNVKELWQSTKTITVSQTRKTEFKTIQSAIDSVPSGNSQWIHIRITPGVYKEHILIPMDKPCIYLERAGRKSTSVEWGDPLTRNATLNVKANNTVAKGITFTNTHNNPVIMEKTRITQAKAARIHADKCAFLDCAFLGVQDTLYDSYGRHYYHNCYIQGGIDFIYGSGQSIFEASTINFSMGNSGVKINGVFTAQERESPDDPSGFVFKNCNITGSGGKAILGRSFTAYARVIIVNSFLSDVVSPEGWNARSFVGHEETIMFVEEGNRGPGANKSKRVQWIKDLRGAALDHFLNITYIDEEGWIAKLPTKIFI* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0050 315 SUPERFAMILY Pectin lyase-like 10 311 IPR011050 -
Apr1g0050 315 PANTHER PECTINESTERASE 11 312 - -
Apr1g0050 315 Pfam Pectinesterase 15 283 IPR000070 GO:0030599|GO:0042545
Apr1g0050 315 Gene3D - 12 314 IPR012334 -
Apr1g0050 315 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0050 Apr-Chr1 610226 612218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0050 10 259 Carbohydrate Esterase AT2G19150 45.059 5.80e-66 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0050 - - aprc:113866618 456.062