Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0048 ATGCAATTCCCACAGCTGCTTTGTACCATTTTCATAGTGTTACTCTTTGCTTGCAGCATCTCTGAATCTCAGAATTGTGATGATCCATTGAAGACCATTACGGTTAGTCTGTCAGGAGAAGCAAATTTCAGAACAATTCAAAGTGCCATTGACTCTGTTCCTATTCAAAACTCTCAGTGGATTCACATCCAAATTTCTCCAGGAGTTTACAACTTGCATTTATATAAGGGTCTAATAAAGAATGGTGTGGTTCATATCCAATACAGAGAACAAGTGTTAATTCCCATGAACAAACCTTGCATCTATCTTGAAGGAGCTGGTAGCTTGCACACACATATTGAATGGAATGATCATCTTAATGCTACTTTTTGTACAGAAGCAAATAACACCATTGCAAAGGGCATTACTTTCACGAATACACTCAACCATCCTATAACATTGGATGAAAGCAATATCACACAAGCCGTGGCAGCTCAGATCAATGCAGATAAATGTGCCTTCTTTCATTGTGCATTTTTAGGGGTTCAAGACACCTTATGGGATTGCTATGGCCGCCATTACTACCATGGCTGCTACATTCAAGGTGGAATCGATTTCATATTTGGAAATGGTCAATCAATCTTTGAGGAAAGTATAATAAACTTTTCGATGGGAAAAAATGGTCCCAAATGGAATGGGATTATCACAGCACAAGAAAGGGATTCTCCAAATGATCCAAGTGGGTTTGTGTTCAAAAACTGTAACATAACAGGGACCACAGGAGGGAAAGCTCTGCTTGGAAGATCCTTGAGAGCATATGCAAGAGTAATTATAGCCAATTCATTCCTATCAGATGTGGTTCTACCCATTGGTTGGAATGCTCGAACCTTCCTTGGCCATGAAAAAACCATCACCTTTGTGGAATTGGGAAACAAAGGACCAGGAGCAGATCAAACAAAGCGTGTGAGATGGATAAAGCACTTAAGTGAATCTGAGCTTCTTCAATTCTTGAATATTACTTTTATTGATAAAGAAGGGTGGATTGCAAAATTACCTAAATCAATTTTCATTTGA 1053 0.3875 MQFPQLLCTIFIVLLFACSISESQNCDDPLKTITVSLSGEANFRTIQSAIDSVPIQNSQWIHIQISPGVYNLHLYKGLIKNGVVHIQYREQVLIPMNKPCIYLEGAGSLHTHIEWNDHLNATFCTEANNTIAKGITFTNTLNHPITLDESNITQAVAAQINADKCAFFHCAFLGVQDTLWDCYGRHYYHGCYIQGGIDFIFGNGQSIFEESIINFSMGKNGPKWNGIITAQERDSPNDPSGFVFKNCNITGTTGGKALLGRSLRAYARVIIANSFLSDVVLPIGWNARTFLGHEKTITFVELGNKGPGADQTKRVRWIKHLSESELLQFLNITFIDKEGWIAKLPKSIFI* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0048 350 Pfam Pectinesterase 33 336 IPR000070 GO:0030599|GO:0042545
Apr1g0048 350 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 7 347 - -
Apr1g0048 350 Gene3D - 28 347 IPR012334 -
Apr1g0048 350 PANTHER PECTINESTERASE 7 347 - -
Apr1g0048 350 SUPERFAMILY Pectin lyase-like 31 343 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0048 Apr-Chr1 600160 602301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0048 31 294 Carbohydrate Esterase AT2G19150 46.097 1.40e-67 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0048 - - aprc:113866591 726.472