Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0040 ATGGTTCGCTCCTATGGCGTCACCCTCTTTAATCGCCTTGCACGTCGATCTCTCTGTGACGCCAACGACTGCGTATATCAAGCTGTGTTCCAAAGGGGTTATAGGACATTGAATTCAACGCCTGGCAATCCATCCAGAGTTATTGATAGTTGTGCACTGAATGATAGCGTTAATTTGAAGAAATGGTTGCTATTGGGAGCGGCTAATACATATTGGGGGTCATCTAGATCAATTCATGGCTCGGCATCGTTGGCAAGAGACTATTATGATGTTCTTGGTGTGAGTAAGAATGCAAGTTCTGCTGAAATAAAGAAAGCTTACTATGGGCTTGCAAAACAGCTCCATCCAGATACAAACAAAGATGATCCTGAGGCTGAAAAGAAGTTTCAAGAAGTTTCAATTGCATACGAGGTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAGATTGGCCATGATGCCTATGTAAACCAACAAAGCACTGGTTTTGGAGGTGAGGGTGGCTTCAATCCTTTCGAGCAGATATTCCGTGATCATGATTTTGTCAAAAGCTTCTTTCATCAGAATATTGGTGGAGAGGATGTGAAGACTTTCATTGAACTATCTTTTATGGAAGCTGTCCAAGGATGCACCAAAAATTTGACATTTCAAACAGATGTGCTTTGCAATAGTTGTGGTGGGAGTGGTGTTCCTCCTGGTACAAGACCTGAAACTTGTAAGCGATGTAAAGGGTCAGGCGTGATATTTGTACAAGCCGGCATATTCAGAATGGAGAGTACTTGTGGTACCTGTAAGGGAACTGGAAAAATTGTATCGAATTACTGCAAGTCTTGCAGGGGTGCAAAGGTTATCAGAGGGACAAAGTCAGTCAAGTTGGATATTATGCCTGGGATAGACAGCAATGAGACAATAAAGGTTTATAGAAGTGGGGGAGCAGATCCTGATGGAGATCATCCTGGTGATCTTTATGTTACTGTCAAGGTTAGAGAAGATCCTGTTTTTCGCAGAGAAGGATCCAATATTCATGTAGATGCTGTTTTAAGTATCACTCAGGCAATTTTGGGGGGAACCATTCAAGTGCCGACTCTTTCTGGAGATGTTGTTTTAAAGGTTCGCCCGGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGGGATCAAGACAAAAAATTCTTACACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACAAATCTGACGCAGAGACAGCGTGAATTGATTGAAGAGTTTGCCAAGGAAGAGCAAGAGGAATTTGATAAACGGAGTGCTGCTTCTGCTTCCGGTTGA 1326 0.4246 MVRSYGVTLFNRLARRSLCDANDCVYQAVFQRGYRTLNSTPGNPSRVIDSCALNDSVNLKKWLLLGAANTYWGSSRSIHGSASLARDYYDVLGVSKNASSAEIKKAYYGLAKQLHPDTNKDDPEAEKKFQEVSIAYEVLKDEERRQQYDQIGHDAYVNQQSTGFGGEGGFNPFEQIFRDHDFVKSFFHQNIGGEDVKTFIELSFMEAVQGCTKNLTFQTDVLCNSCGGSGVPPGTRPETCKRCKGSGVIFVQAGIFRMESTCGTCKGTGKIVSNYCKSCRGAKVIRGTKSVKLDIMPGIDSNETIKVYRSGGADPDGDHPGDLYVTVKVREDPVFRREGSNIHVDAVLSITQAILGGTIQVPTLSGDVVLKVRPGTQPGQKVVLKKKGIKTKNSYTFGDQYVHFNVNIPTNLTQRQRELIEEFAKEEQEEFDKRSAASASG* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0040 441 SUPERFAMILY Chaperone J-domain 86 188 IPR036869 -
Apr1g0040 441 CDD DnaJ_zf 223 283 IPR001305 GO:0031072|GO:0051082
Apr1g0040 441 SUPERFAMILY HSP40/DnaJ peptide-binding domain 334 420 IPR008971 GO:0006457|GO:0051082
Apr1g0040 441 Pfam DnaJ C terminal domain 199 409 IPR002939 -
Apr1g0040 441 ProSitePatterns Nt-dnaJ domain signature. 129 148 IPR018253 -
Apr1g0040 441 SUPERFAMILY HSP40/DnaJ peptide-binding domain 195 330 IPR008971 GO:0006457|GO:0051082
Apr1g0040 441 CDD DnaJ_C 194 412 - -
Apr1g0040 441 Hamap Chaperone protein DnaJ [dnaJ]. 84 436 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Apr1g0040 441 Pfam DnaJ central domain 223 283 IPR001305 GO:0031072|GO:0051082
Apr1g0040 441 Gene3D DnaJ domain 84 195 IPR036869 -
Apr1g0040 441 Pfam DnaJ domain 87 149 IPR001623 -
Apr1g0040 441 Gene3D - 223 283 - -
Apr1g0040 441 ProSiteProfiles Zinc finger CR-type profile. 210 288 IPR001305 GO:0031072|GO:0051082
Apr1g0040 441 PRINTS DnaJ domain signature 89 107 IPR001623 -
Apr1g0040 441 PRINTS DnaJ domain signature 107 122 IPR001623 -
Apr1g0040 441 PRINTS DnaJ domain signature 124 144 IPR001623 -
Apr1g0040 441 PRINTS DnaJ domain signature 144 163 IPR001623 -
Apr1g0040 441 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 210 286 IPR036410 -
Apr1g0040 441 Gene3D - 196 325 - -
Apr1g0040 441 ProSiteProfiles dnaJ domain profile. 87 152 IPR001623 -
Apr1g0040 441 Gene3D - 331 438 - -
Apr1g0040 441 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 30 441 - -
Apr1g0040 441 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 30 441 - -
Apr1g0040 441 CDD DnaJ 87 141 IPR001623 -
Apr1g0040 441 SMART dnaj_3 86 144 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0040 Apr-Chr1 509953 538812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0040 81 149 C2H2 Transcription Factor Family AT1G74250 44.595 3.42e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0040 K03686 - gmx:100799735 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0040 1 509953 538812 Apr1g0040 1 509953 538812 ECH