Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0027 ATGGAGCTTGGCTTGAGCTTAGGAGACCCTTCAAAGCCCCTTGAAGCTCCCAACCAATTGGGGTTAGGCTTCAACACCAACTTATCAATTGGTCCACTTTTTACCAAACTAAAAGATCAACATCAAGAAGAAGAAGAAGAAGAAGAAGAAAGAGCAAAGCAAAAGCATAAACACAATAGTCAAAGCCACAGCACTACTGAAGAAGAACATGAAGAAGCTACAACTGAATCCCTTGTTAGTCCTTCTCTCAAACCCAATACTAACACAATTGTTCAGCTTGATCTTCTTCCTCATACACCTGCCGCTCCTCGTATCAACCCACCTTCCACCTTCTCCTTCCCATGGGATCCTCTTTGGGAAAACGCTGGGAGTGGTTGTTCAATGGGGTTGGACATGAACTGGGTGCCGATGGCCGCGACGGTGACGGCGGAAGATGAGGCAGAGCTGTCATCTTCCCCAAACAGTGCTGCTTCATCGTTTCACATGGATCTCTGCATATTCAGGAGAAGAAGTGTAAGTGGAGAATGTTATGATCAAACCAAAAGGGTTTACTGCAGAGGAAGTGATGAAGATGAGAACGGTGGCAGTGGCAGTACCACTAAGAAACTTAGGCTCTCTAAGGAACAATCTGCTTTCCTTGAAGAGAGCTTCAAAGAGCACAACACTCTTAACCCTAAACAAAAGGTTGCTCTCGCCAAACAACTCCATCTTCGCCCTCGCCAAGTAGAAGTATGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAGACAGAGGTGGACTGTGAGTATTTGAAGAGGTGCTGTGACACACTTAAAGAAGAGAATAAAAGGCTTCAGAAGGAGCTTCAAGAGTTGAGGGCTTTGAAGACTAATTCAAACCCATTCTATATGCAATTACCAGCCACAACCTTGACTATGTGCCCATCCTGTGAGCGTGTTGCTCCCAATTCCACCTCCAATACTACTCCTTCTGTTTCACTCACTGCCAAAGCCATTCAATTTCCAATTGGTGATAATAAACCTTGGAAGAAATTAATTTGA 1044 0.4454 MELGLSLGDPSKPLEAPNQLGLGFNTNLSIGPLFTKLKDQHQEEEEEEEERAKQKHKHNSQSHSTTEEEHEEATTESLVSPSLKPNTNTIVQLDLLPHTPAAPRINPPSTFSFPWDPLWENAGSGCSMGLDMNWVPMAATVTAEDEAELSSSPNSAASSFHMDLCIFRRRSVSGECYDQTKRVYCRGSDEDENGGSGSTTKKLRLSKEQSAFLEESFKEHNTLNPKQKVALAKQLHLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLKEENKRLQKELQELRALKTNSNPFYMQLPATTLTMCPSCERVAPNSTSNTTPSVSLTAKAIQFPIGDNKPWKKLI* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0027 347 Coils Coil 262 292 - -
Apr1g0027 347 PANTHER PROTEIN, PUTATIVE-RELATED 1 331 - -
Apr1g0027 347 ProSiteProfiles 'Homeobox' domain profile. 196 256 IPR001356 GO:0003677
Apr1g0027 347 Pfam Homeobox associated leucine zipper 256 290 IPR003106 GO:0006355|GO:0043565
Apr1g0027 347 SMART halz 256 300 IPR003106 GO:0006355|GO:0043565
Apr1g0027 347 CDD bZIP 249 288 - -
Apr1g0027 347 SMART HOX_1 198 260 IPR001356 GO:0003677
Apr1g0027 347 Coils Coil 37 58 - -
Apr1g0027 347 Pfam Homeodomain 201 254 IPR001356 GO:0003677
Apr1g0027 347 ProSitePatterns 'Homeobox' domain signature. 231 254 IPR017970 GO:0000981|GO:0006355
Apr1g0027 347 SUPERFAMILY Homeodomain-like 193 257 IPR009057 -
Apr1g0027 347 Gene3D - 204 254 - -
Apr1g0027 347 MobiDBLite consensus disorder prediction 1 85 - -
Apr1g0027 347 MobiDBLite consensus disorder prediction 37 75 - -
Apr1g0027 347 CDD homeodomain 201 257 IPR001356 GO:0003677
Apr1g0027 347 PANTHER - 1 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0027 Apr-Chr1 356738 358990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0027 106 346 Homeobox Transcription Factor Family AT3G60390 48.450 6.06e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr1g0027 Homeodomain 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0027 K09338 - gmx:100778742 343.199