Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0026 ATGGAGCCTTTGAACCCAGCTCATGCTTCAGTAGTTGAATTTGATTCTTTATTGGAAGAACTAGAATCTGCCCATGAACGTGTACAGGACCGTATTAGGCACCTTGAAGCAATAACTTCTAGAGCGAGGCAGCGTCAGAGGTGGCCGCTGGTTCACACTCCACTCCAAATAACCAACTTTTTTACGGGAGAAGCTGCAGTGGGTGATGCTCAAGATGATGGATTGGAGCGCCAAGAAGTTGAGGAACGAATGGTTGAAAGGTCGAGAGGGTCCAAAAGGAAAGGTGTCCATTTAGTAGCACAAGCATTGGAGGTGGAAACAGATGGCAATAAGAAAGGGGAAAGCACTGGAAATTTTTTTGATTGCAACATATGCTTGGACATGGCAAGAGATCCTGTGTTGACCTGCTGCGGTCACTTGTTTTGTTGGGCATGCTTCTATCAATTGGCTTATGCCTATTCAAATGCAAGGGAGTGCCCTGTTTGTAATGGAGAGGTCACTGAAACTGGCATTGTTCCAATTTATGGCAATTCAAGTGGCAGTGGCAATTATGATTTGAGAGTTCCTCCTCGACCTGCTGCACCTAGAACCGAGAGCTTTAGGCAGCAGCTAATAAGCCAAGGAGCATCTTCTGCTATAATCCAGAGTATCCGCAGGTTTAATAACCTTATTGGTGGGTTAGGGGAGCGAGTTCAATCAGAAAGCCACAATACCACTGCTGAGAGAAATAATGCTTTGCCCACTCGTTCTCGCTTGCAAATAGGCAATGGTCAACAAACTGGTTCCGCTCCGATCTCGAGGTTGTTAGTGCAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCATTAAATTCTGCAATGGATTCTGCTGAAAGATTGGTTGAGGACCTTGAGTCATATATTCATGATCATCCCATAGGAGGAAGCAGGCAGTTAAATCATCATGCTGTTGATAGAAACTCAACTTTTAATGGGAATGTAACAAATGTTGCGATCGCAGCAACAGATTCTTTAGCTGCATCTTCTACGTCTCCTTTCGGTAGGAATGTTGACACCAATGCTGATATTGGCTCTGAAATTCAGACAACTGATAGTAACAGACTGATTGTCACTGAGACTCGTCCACTGGAACCTTCTTCGTCTTACAGTGGCACCACTGATGTTTCAACTTCAAGACAAGTTTCAAATGATCCCAGAAGGAGGAGGTTAAGATTCTTAAGCTCTTAA 1227 0.4425 MEPLNPAHASVVEFDSLLEELESAHERVQDRIRHLEAITSRARQRQRWPLVHTPLQITNFFTGEAAVGDAQDDGLERQEVEERMVERSRGSKRKGVHLVAQALEVETDGNKKGESTGNFFDCNICLDMARDPVLTCCGHLFCWACFYQLAYAYSNARECPVCNGEVTETGIVPIYGNSSGSGNYDLRVPPRPAAPRTESFRQQLISQGASSAIIQSIRRFNNLIGGLGERVQSESHNTTAERNNALPTRSRLQIGNGQQTGSAPISRLLVQGAASFSSLSSALNSAMDSAERLVEDLESYIHDHPIGGSRQLNHHAVDRNSTFNGNVTNVAIAATDSLAASSTSPFGRNVDTNADIGSEIQTTDSNRLIVTETRPLEPSSSYSGTTDVSTSRQVSNDPRRRRLRFLSS* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0026 408 MobiDBLite consensus disorder prediction 232 261 - -
Apr1g0026 408 CDD RING-HC_AtRMA_like 120 164 - -
Apr1g0026 408 SMART ring_2 122 162 IPR001841 -
Apr1g0026 408 MobiDBLite consensus disorder prediction 371 401 - -
Apr1g0026 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 202 IPR013083 -
Apr1g0026 408 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 6 324 - -
Apr1g0026 408 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 324 IPR045103 GO:0005783|GO:0006511|GO:0061630
Apr1g0026 408 ProSiteProfiles Zinc finger RING-type profile. 122 163 IPR001841 -
Apr1g0026 408 MobiDBLite consensus disorder prediction 371 393 - -
Apr1g0026 408 Pfam Zinc finger, C3HC4 type (RING finger) 121 168 - -
Apr1g0026 408 Coils Coil 11 38 - -
Apr1g0026 408 SUPERFAMILY RING/U-box 118 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0026 Apr-Chr1 345803 348151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0026 73 349 C3H Transcription Factor Family AT3G58030 35.439 2.80e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0026 K10666 - gmx:100794016 496.123