Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0022 ATGGAGAAGGAGAAGGAGAAGGAGAAAGAGAAGGATTGGTTTAATTCAAAGGAGGAAGCATTCTCATACTACAAAGAATACGCCAAATCGGTGGGTTTCTCGGCCATCATAAAAGCGAGTCGTCGATCTCGAATCTCAGGGAACTTCATCGACGCCAAATTCGCTTGCACGAGATGCGGCGTCTCCAACACTCTCAAAAGAAAACGTGGCCCAACCAAAACGGATTGCAAGGCCTGCATGCATGTCAAGAGAACGCACCACGGTACATGGATCATCTCTTCTTTTGTTGAGCACCATAATCACGACACCTTCCCTTACCATTACACCAACAATGCAACTCCAAACACATCAATCTCTTCCAAATCTAATCAAACCAAACTGCATAAGCATTTCCCTTTTGCCCATCAAGACCTTCACTCCTTGCTTCACCATTTTATCTCTATGCAAGTGGAAAACCCTAACTTCTTCTACGCTGTCGATTTCCACCACGACCAGCGTTTCAAGACCGTTTTCTGGGTCGATGCTAAGGCCAGGCTTGATTACAGGCATTTCAGCGACGTGGTTCTGTTCGACACCACGCACCTCAAGAATGACTACAAGCTTCCCTTCGTTCCCTTTCTGGGTGTGAACCATCACTTTCAGTTCATGTTGCTGGGATTGGCATTCCTGTCTGATCAGTCCGAATCCACGTTTGCGTGGCTCATGCGCGCCTGGCTGAGGGCAATGGGTGGAATTGCTCCCAAGGTGATTCTTACTGACCAGGATCAAGCGCTCAAGGAGGCTGTTGCCATGGCCATTCCGGATTCTTGTCATTGTTTTTGTCTGTGGCATGTGTTCAGTAAGGTTCCGGAGAAGCTCGGTTGCGTCATGCATCAGCATGAGGATTTTGCTGCCACGTTTAACAAGTGTGTTATCAAGTCCAGGACAAAGGAGCAATTTGAGAAGAGGTGGGGGGAAATGGTTGAGAGATTTGATTTAGGTGATAACGGTTGGTTGCGTTCAGTTTATGAGGACCGCCAACGGTGGGTACCGGTATATATGAAAGGCAGAGTTTTGGCAGGGATGTCTACTGTGCAGAGATCGGACTCTATGAACTGTCTGTTGGACAGATATATGCAGAGGAAAACAACATTGAAGGAGTTTTTGGAGCAGTACAAAGTGGTGTTGCGTGATAAGTGTGAAGAGGAAGCAAAAGCAGAGTTTGAAACGCTGCATAAACAGCCGGTGTTGAAATCGCCATCGCCTTTTGGGAAACAGATGGTGGAGTTATACACGCATGAAATATTTAAGAAATTCCAGAGCGAGGTTTTGGGAGTTGTTGCTTGTCATCCAAGAAAGGAAAGTGAGGATGGACCGCGAATAATGTTTAGAGTTCAGGATTTTGAAGACAATCAAGATTTTGTTGTCATGTGGAATGAATTGACCTTGGAAGCTTCGTGTTCCTGTTATTTGTTTGAATTCAATGGCTTTCTTTGTAGGCATGTAATGATTGTGCTACAGATTTCTGGTGTGCATAGCATCCCGTCTCGGTATATATTGAAACGCTGGACAAAAGATGCCAAGGGTAGAGAAACATCAAGAGATATGTCAGATGTGGTTGTCTCAAACTCAAGGGCTACGCGCTATGATAATTTGTGTCAACGAGCCTTTGAGCTGGGTGATGAAGGGTCTTTGTCACAAGAGAGTTACATTGCTGCTGTAAATGCGTTGGAAGAAGCTCTTAGAAAGTGTGAGAGCCTGAAGGAGTCAATTCAGAATGTCATAGAACTGAATCCACCAATTTTTGGTTCTCAACAGACAAATCTGAGGAATAGTGTTGATCATACTAACAAAAAGAACAGTACTCTTAAGAAAAGACAGGTAAGCCCCGAACCAGAGATCATTGCTATGGGAGTCAATTCCAGCTGGCAGCAAGTGGTTGGTGCTTCTTGTTTGAAGAAAACGGAAAACCCCAATACACGGGCAGCTGACCCTGATTGTTCATGTGAATCACAGCAGAGCATTCAAAAGATGGATCAGCTGAACTCAAGGCCTCAGAACCTGGATGACTATTTTGCTACTCAACAAATTAGTTCAGGAATGTTGAACTCGATAGCTGCTATTCGTAATGATTATTACAGCAACCAGCATGGCATCCAAAGGCTGGGACAGTCGTACTCAATTGCACCCATCCATGGTGCCCATTACATGGCCCCACAAAGAATGCATGGGATGGATCAGCCTACTGGAGGATCCACACTACTACAAGGGATGGAGGCAAATGTGAAACAGCTAAATTCAATGCACCGTTCTCAGTAG 2298 0.4517 MEKEKEKEKEKDWFNSKEEAFSYYKEYAKSVGFSAIIKASRRSRISGNFIDAKFACTRCGVSNTLKRKRGPTKTDCKACMHVKRTHHGTWIISSFVEHHNHDTFPYHYTNNATPNTSISSKSNQTKLHKHFPFAHQDLHSLLHHFISMQVENPNFFYAVDFHHDQRFKTVFWVDAKARLDYRHFSDVVLFDTTHLKNDYKLPFVPFLGVNHHFQFMLLGLAFLSDQSESTFAWLMRAWLRAMGGIAPKVILTDQDQALKEAVAMAIPDSCHCFCLWHVFSKVPEKLGCVMHQHEDFAATFNKCVIKSRTKEQFEKRWGEMVERFDLGDNGWLRSVYEDRQRWVPVYMKGRVLAGMSTVQRSDSMNCLLDRYMQRKTTLKEFLEQYKVVLRDKCEEEAKAEFETLHKQPVLKSPSPFGKQMVELYTHEIFKKFQSEVLGVVACHPRKESEDGPRIMFRVQDFEDNQDFVVMWNELTLEASCSCYLFEFNGFLCRHVMIVLQISGVHSIPSRYILKRWTKDAKGRETSRDMSDVVVSNSRATRYDNLCQRAFELGDEGSLSQESYIAAVNALEEALRKCESLKESIQNVIELNPPIFGSQQTNLRNSVDHTNKKNSTLKKRQVSPEPEIIAMGVNSSWQQVVGASCLKKTENPNTRAADPDCSCESQQSIQKMDQLNSRPQNLDDYFATQQISSGMLNSIAAIRNDYYSNQHGIQRLGQSYSIAPIHGAHYMAPQRMHGMDQPTGGSTLLQGMEANVKQLNSMHRSQ* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0022 765 MobiDBLite consensus disorder prediction 599 620 - -
Apr1g0022 765 Pfam MULE transposase domain 187 280 IPR018289 -
Apr1g0022 765 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 14 655 IPR031052 GO:0006355
Apr1g0022 765 Coils Coil 567 590 - -
Apr1g0022 765 Pfam SWIM zinc finger 468 499 IPR007527 GO:0008270
Apr1g0022 765 Pfam FAR1 DNA-binding domain 22 104 IPR004330 -
Apr1g0022 765 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 14 655 - -
Apr1g0022 765 ProSiteProfiles Zinc finger SWIM-type profile. 456 503 IPR007527 GO:0008270
Apr1g0022 765 SMART 26again6 478 505 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0022 Apr-Chr1 319983 324110 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Apr1g0022 MULE 3.2e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0022 - - aprc:113869938 1571.6