Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0018 ATGGAATCCTGCAACTGTATTGACCCACAATTGCCTGCTGATGACTTATTGATGAAATACCAATATATCTCAGATTTCTTCATTGCTCTTGCTTATTTCTCAATCCCTTTGGAGCTTATCTACTTTGTTAAGAAATCAGCAGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCTTTCATAGTTCTATGCGGAGCAACACATCTAATTAATTTATGGACCTTTAGAATTCATTCAAGGACTGTGGCCGCTGTGATGACCACTGCTAAGGTTTTAACTGCTGTGGTTTCATGTGCAACTGCCCTTATGCTTGTACATATTATTCCTGATTTATTAAGTGTTAAAACTAGGGAATTATTTTTGAAGAACAAGGCTGCAGAGCTTGATCGAGAAATGGGCTTGATTCGCACACAGGAGGAAACTGGTCGACATGTTAGGATGTTGACTCATGAGATTAGAAGCACTCTTGATAGACACACAATACTGAAAACAACTCTTGTTGAATTGGGTAGAACTTTGGCACTTGAGGAATGTGCCTTATGGATGCCAACACGATCTGGGTTAGAGCTTCAACTCTCTTATACATTGCGACAGCAGAACCCAGTTGGATACACAGTACCCATTCATCTTCCTGTGATCAATCAAGTATTTAGTATCAACCGGGCAGTAAAAATTTCCCCAAATTGTCCAGTTGCTAGATTACGACCTTATGCTGGAAAATACATGCCTGGGGCAGTAGTAGCTGTTCGGGTTCCTCTATTACATCTTTCTAATTTCCAAATATATGATTGGCCGGAAGTTTCAACGAGAAGTTATGCTTTGATGGTTTTGATGCTACCATCAGATAGCGCTAGACAGTGGCATGTACATGAGTTAGAACTGGTTGAGGTAGTTGCTGATCAGGTAGCAGTTGCTCTTTCACATGCTGCAATCTTAGAAGAGTCAATGAGGGCAAGGGATCAGCTCATGGAGCAGAATGTTGCACTTGATCTAGCAAGAAGAGAAGCAGAAACTGCAATTCGTGCTCGCAATGACTTTTTGGCTGTTATGAACCATGAGATGAGAACTCCCATGCATGCAGTTATTGCACTCTCTTCATTATTACAGGAAACAGAGCTGACAGCTGAGCAACGTCTGATGGTGGAGACAATATTGAAAAGCAGCAATTTGTTGGCTACTCTCATCAATGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTCTTCAACTTGAAGCAGCCACGTTTAATCTTCATTCTTTGTTCAGAGAGGTCCTTAACTTGATTAAGCCTGTTGCCTCTGTTAAAAAGTTGTCACTTACTTTACAGTTAGCTTCAGATTTGCCAGTGTATGCCATTGGTGATGAAAAACGTCTCATGCAAACTATTCTAAATGTTGTTGGTAATGCTGTGAAGTTCTCAAAAGAAGGTAGCATTTCCATCACTGCTTTTGTTGCAAAGCTTGAATCCTTCAGAGATGCTCGAAATCCTGACTTTCTTCCAGTGCCAAGTGATAGTCACTTTTATTTGCGAGTACAGGTAAAAGATTCAGGATTAGGATTTAATCCACAAGATATCCCAAAGTTATTCACTAAGTTTGCACAAAGCCAATCATTAACAACAAAAAATCCGCCTGGAAGTGGACTTGGCCTTGCAATTTGTCGGAGGTTTGTTAATCTCATGGAAGGACATATATGGATTGAAAGTGAAGGTATTGGTAAAGGATGCACAGCCACTTTTATTGTGAAACTTGGTATCCCAGACCGATCAAATGAATTTAAGCTACCTTTTGTGCCTAAAGTCCCAGGAAATCATGGTTCTACAAACTTTGCTGGGCTCAAGGTTCTTGTCATGGATGATAATGGGGTTAGCAAGACAGTAACAAAGGGACTTCTTATGCATTTAGGATGTGATGTCACAACTGCAAGCTCGAGTGAAGAATGCCTGCGTGTTGCTTCTCCAGAACACAAAGTGGTCTTCATGGATGTTTGTACAGGGTTAGATGGCTATGAACTAGCAGTACGCTTACATGAGAAGTTTACGAAACATCACGATAGACCACTGATAGTTGCTCTTACCGGAAACACCAAAAAGGTGACCAAAGAGAACTGTATGAGGGTTGGTATGAATGGCCTTATATTGAAACCTGTTTCTGTTGACAAAATGAGGGGTGTTTTATCAGAACTATTGGAGCGCCGAGTTCTGTTTGAAACTGTTTGA 2223 0.4071 MESCNCIDPQLPADDLLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFRIHSRTVAAVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRSGLELQLSYTLRQQNPVGYTVPIHLPVINQVFSINRAVKISPNCPVARLRPYAGKYMPGAVVAVRVPLLHLSNFQIYDWPEVSTRSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAVIALSSLLQETELTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEAATFNLHSLFREVLNLIKPVASVKKLSLTLQLASDLPVYAIGDEKRLMQTILNVVGNAVKFSKEGSISITAFVAKLESFRDARNPDFLPVPSDSHFYLRVQVKDSGLGFNPQDIPKLFTKFAQSQSLTTKNPPGSGLGLAICRRFVNLMEGHIWIESEGIGKGCTATFIVKLGIPDRSNEFKLPFVPKVPGNHGSTNFAGLKVLVMDDNGVSKTVTKGLLMHLGCDVTTASSSEECLRVASPEHKVVFMDVCTGLDGYELAVRLHEKFTKHHDRPLIVALTGNTKKVTKENCMRVGMNGLILKPVSVDKMRGVLSELLERRVLFETV* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0018 740 SUPERFAMILY GAF domain-like 161 310 - -
Apr1g0018 740 Gene3D - 608 740 - -
Apr1g0018 740 SUPERFAMILY CheY-like 610 733 IPR011006 -
Apr1g0018 740 Pfam GAF domain 158 307 IPR003018 GO:0005515
Apr1g0018 740 PRINTS Bacterial sensor protein C-terminal signature 511 525 IPR004358 GO:0016310|GO:0016772
Apr1g0018 740 PRINTS Bacterial sensor protein C-terminal signature 529 539 IPR004358 GO:0016310|GO:0016772
Apr1g0018 740 PRINTS Bacterial sensor protein C-terminal signature 546 564 IPR004358 GO:0016310|GO:0016772
Apr1g0018 740 SMART gaf_1 158 317 IPR003018 GO:0005515
Apr1g0018 740 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 455 585 IPR003594 -
Apr1g0018 740 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 737 - -
Apr1g0018 740 PIRSF Ethylen_sen_hybr_HK 1 738 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Apr1g0018 740 ProSiteProfiles Response regulatory domain profile. 615 731 IPR001789 GO:0000160
Apr1g0018 740 CDD REC_ETR-like 614 727 - -
Apr1g0018 740 SMART REC_2 614 727 IPR001789 GO:0000160
Apr1g0018 740 Gene3D - 136 308 IPR029016 -
Apr1g0018 740 Gene3D - 408 592 IPR036890 -
Apr1g0018 740 SMART HisKA_10 343 408 IPR003661 GO:0000155|GO:0007165
Apr1g0018 740 Pfam His Kinase A (phospho-acceptor) domain 344 408 IPR003661 GO:0000155|GO:0007165
Apr1g0018 740 PANTHER ETHYLENE RECEPTOR 1-LIKE 2 737 - -
Apr1g0018 740 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 397 585 IPR036890 -
Apr1g0018 740 SMART HKATPase_4 455 587 IPR003594 -
Apr1g0018 740 Pfam Response regulator receiver domain 616 724 IPR001789 GO:0000160
Apr1g0018 740 CDD HisKA 341 404 IPR003661 GO:0000155|GO:0007165
Apr1g0018 740 Gene3D - 309 407 - -
Apr1g0018 740 ProSiteProfiles Histidine kinase domain profile. 350 589 IPR005467 -
Apr1g0018 740 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 329 409 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0018 Apr-Chr1 296606 303308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0018 1 738 Miscellaneous Gene Families AT1G66340 82.432 0.0 1246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr1g0018 GAF 1.7e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0018 K14509 - gmx:100795340 1374.38