Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0003 ATGGCTTTTAAGACTTGTGCTGGGAATGGAAAAGGTGACAAGACCTCTTTGATTCCACAGTCCAGAAGACCAAGCCTCTCCTCTCTGCAAATACCAGCAAGGTCAATAGAAAATGCATTATCTTCTTCTTCCACAGATGGTTCTACGCTGTCAAGTCCAGGTTCCACTAGAGGACTGCCACCGAGGCCAAATTCAGCCAAAGTCAAGTCCTCTATGAGAACTTTACTTTCTGAGAGGAGCTTTAGGGCCAAAACTTGTTCACAGGACAGTGAAAGGACAGTTCTGATTGTTCCTTATACTTTACCATCAGATGGTCCTATGGATAATAATAATAATAATAATAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGATTTTGTTCCCTTCATCAACAAAAGCAGCACATTCATTGCCTGTTACTCCAATTGCAAACTCAGGTGTAGAGAATGTACATGGAAGACACCCAGGGAATGGTTCTGATTTAAGTAAAATGGCCGTATATCAGCATATGACTCGATCGTTTTCAGTTCCAGTTAATGTTAAAGCCACTAATTTAAGGCCTACCGATTCTAGGGGCTTGATTCGTGTAATTTCAGCAAGATCACATCTGGCAACTACTGATGACATTTCAACTTCCAATGCTTTGGTGTCAGAGATTGTCTCTGAAGATGCTTCTGAGGATATTCCAGAAGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGCGAATACTCTTAGGATGGAGTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAGACCTGTGATGTCTGCAAGCAGGATGTACGAAACCTCCCTGTAACACTCTTGAAAATTTCAAATCCTCTAACTGTTGCTAGGCAGCCATCGAGTGCACCAGCGCCACAGCAGAGAGAAATAGCTTATTACAGGATATGGCAGGATGTATCAGTACTTGTCTTGGTCAGCATGCTTGCATATTTTTGCTTCCTAGAGGAACTATTGGTTTCAGATATGGGCTCTCATGCTCTTGCCATTTCATTACCATTCTCTTGCGTCTTTGGTCTCCTTGCATCTATGATTGCTTCAACCATGGTTAGTGGCAGTTACATGTGGGCTTATGCTTGCTTCCAGTTTGCAATTATCATCCTGTTTGCTCATGTGTTTTATACTATACTTAATGTCAATGCCATTCTCTCAGTTCTTCTCTCCTCATTCACTGGATTTGGGATTTCAATAAGCTTGAATACTCTGCTTGTGGAATATATTAGATGGAGAACAAGAAGGCAGATTCAATCTTCTAATCAGTATGTTAACACGACGCAGCAGCAACACCATGATCGTGCTCAGCAGCAGCAAGAACATCAAAGACAGCATCATCAACTGCAAACGCTGCAGAACCAACGACAATAG 1449 0.421 MAFKTCAGNGKGDKTSLIPQSRRPSLSSLQIPARSIENALSSSSTDGSTLSSPGSTRGLPPRPNSAKVKSSMRTLLSERSFRAKTCSQDSERTVLIVPYTLPSDGPMDNNNNNNKPSTSRSLSLNKILFPSSTKAAHSLPVTPIANSGVENVHGRHPGNGSDLSKMAVYQHMTRSFSVPVNVKATNLRPTDSRGLIRVISARSHLATTDDISTSNALVSEIVSEDASEDIPEEEAVCRICLVELGEGANTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKISNPLTVARQPSSAPAPQQREIAYYRIWQDVSVLVLVSMLAYFCFLEELLVSDMGSHALAISLPFSCVFGLLASMIASTMVSGSYMWAYACFQFAIIILFAHVFYTILNVNAILSVLLSSFTGFGISISLNTLLVEYIRWRTRRQIQSSNQYVNTTQQQHHDRAQQQQEHQRQHHQLQTLQNQRQ* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0003 482 MobiDBLite consensus disorder prediction 454 482 - -
Apr1g0003 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 292 IPR013083 -
Apr1g0003 482 MobiDBLite consensus disorder prediction 104 120 - -
Apr1g0003 482 CDD RING_CH-C4HC3_MARCH 237 285 - -
Apr1g0003 482 MobiDBLite consensus disorder prediction 14 59 - -
Apr1g0003 482 SUPERFAMILY RING/U-box 233 288 - -
Apr1g0003 482 SMART ringv_2 236 285 IPR011016 GO:0008270
Apr1g0003 482 PANTHER OS02G0165000 PROTEIN 11 465 - -
Apr1g0003 482 MobiDBLite consensus disorder prediction 1 73 - -
Apr1g0003 482 Pfam RING-variant domain 237 284 IPR011016 GO:0008270
Apr1g0003 482 Coils Coil 460 480 - -
Apr1g0003 482 MobiDBLite consensus disorder prediction 468 482 - -
Apr1g0003 482 MobiDBLite consensus disorder prediction 100 120 - -
Apr1g0003 482 PANTHER OS02G0165000 PROTEIN 11 465 - -
Apr1g0003 482 ProSiteProfiles Zinc finger RING-CH-type profile. 229 291 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0003 Apr-Chr1 52912 65391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0003 220 343 C3H Transcription Factor Family AT2G37950 32.847 4.69e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0003 - - gmx:100779396 688.723