Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2379 ATGGAGGAAACAATGGCAGCAAGGTATTGGTGTCATATGTGCTCTCAAATGGTCAATCCCATCATGGATGGGGAAATCAACTGTCCATTTTGCCAAAGTGGATTTGTTGAAGAAATGAGTAACGCAACCAGTGGCAGCAACATTCCCAATACGCCAGAAGCTGATTTTGAATCTGATCGGGCTCTCTCCCTTTGGGCGCCCATCTTGCTAGGGATGATGGGCAATCCACGTCATCGTCGAAGACTCAGACAAATAGAGAATGATGATGACTATGATAATGGTAATGGTGATGATGTTGATGGTGTCACACGCCATGGTGGAGAAACTGAATATGATCGAGAGCTTGAGTCCATCCTTCGGAGGAGAAGGAGAAGCTCAGCTACTATTCTACAATTGCTCCAAGGTATAAGAGCTGGGCTGGCTTCTGAATCATATGAGAATACCAACATTGATGACCGAGACAGGGAAAGAGAAAGAGAGCGTGTAATCTTGATCAATCCTTATAATCAGACTATTATTGTTCAAGGTTCCTATGATTCAAACCAGAATCAAAGTGATGGTCATAGCCCCATTGGGTCTATGGGTGATTATTTCATAGGGCCTGGTTTGGATTTATTGCTGCAACATTTGGCTGAGAATGATCCCAATAGATATGGAACTCCGCCTGCCCAGAAGGAGGCCATTGAAGCACTGCCTACTGTAACAATCAATGAGAATTTGCAGTGTTCTGTTTGTCTGGATGATTTTGAAGTTGGTTCTGAAGCTAAAGAGATGCCTTGTAAGCATAGGTTTCATATTGGGTGTATCTTGCCCTGGCTGGAGCTTCATAGTTCTTGTCCGGTTTGCAGGTTTCAACTGCCAGTGGGTGAATCTAAGCAAGATCCTAATGTTTCAAGGAATAGCAGAAACCAAAGTGAGGATGAAAATATTCGACATGACAATGCCGAAGAAAGAAATGAGGAAGGGAGAAATGCAAGTGGGACTAGAAGATTCTCATTTCCATGGCCTTTCGATGGACTATTTTCTTCATCGAACTCATCATCGTCTGTTAATGCCAATGCAAACGGAAATGATACTCAATCAGATGACAACTGA 1095 0.4311 MEETMAARYWCHMCSQMVNPIMDGEINCPFCQSGFVEEMSNATSGSNIPNTPEADFESDRALSLWAPILLGMMGNPRHRRRLRQIENDDDYDNGNGDDVDGVTRHGGETEYDRELESILRRRRRSSATILQLLQGIRAGLASESYENTNIDDRDRERERERVILINPYNQTIIVQGSYDSNQNQSDGHSPIGSMGDYFIGPGLDLLLQHLAENDPNRYGTPPAQKEAIEALPTVTINENLQCSVCLDDFEVGSEAKEMPCKHRFHIGCILPWLELHSSCPVCRFQLPVGESKQDPNVSRNSRNQSEDENIRHDNAEERNEEGRNASGTRRFSFPWPFDGLFSSSNSSSSVNANANGNDTQSDDN* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2379 364 MobiDBLite consensus disorder prediction 85 109 - -
Apr10g2379 364 SUPERFAMILY RING/U-box 231 295 - -
Apr10g2379 364 CDD RING-H2_RNF126_like 241 283 - -
Apr10g2379 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 289 IPR013083 -
Apr10g2379 364 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Apr10g2379 364 MobiDBLite consensus disorder prediction 338 364 - -
Apr10g2379 364 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 341 - -
Apr10g2379 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 341 - -
Apr10g2379 364 ProSiteProfiles Zinc finger RING-type profile. 242 283 IPR001841 -
Apr10g2379 364 Pfam Ring finger domain 241 283 IPR001841 -
Apr10g2379 364 MobiDBLite consensus disorder prediction 290 364 - -
Apr10g2379 364 SMART ring_2 242 282 IPR001841 -
Apr10g2379 364 MobiDBLite consensus disorder prediction 304 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2379 Apr-Chr10 35529032 35531442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2379 108 296 C3H Transcription Factor Family AT1G26800 36.548 4.65e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2379 K11982 - gmx:100784876 530.791