Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2375 ATGAGGGAGGGCGGCGAAGAGAGAGTGAATTTGGAGAGGAAGAGAGAGATTAGAGATATGAGAGGAAGAAGTTACAGTCCGTCGCCTCCGCCGCGTTATAGCAGAAGAGGAGGGAGGAGTCCGAGCCCCAGAGGGCGGTATCCTCCCCGTGGGAGTAGGGATCTTCCTACCAGCCTTCTTGTTCGTAACCTTCGCCATGACTGTAGGCCCGAAGATCTTCGGCGTCCTTTTGGTCAATTTGGTCCTCTCAAGGATATTTACCTTCCCAAGGATTATTACACTGGAGAACCCCGTGGTTTTGGTTTTGTGCAATACGTGGATCCTGCCGATGCTGCCGATGCCAAATATCACATGGATGGTCAAATTCTTCTTGGTCGTGAGTTGACAGTTGTCTTTGCTGAGGAGAATAGAAAGAAGCCAAATGAGATGAGGTCCAGAGAGAGAAGGGGTCGATTTTATGATCGAAGGAGGTCTCCTCCTCGTTACTCCCGTTCGCCCCGTTACTCTCCATCTCCACCGCCGCGCCATGGATCTCGTTCTCGCTCTCGTGACTATTATTCCCCTCCTCCTAAACGAAGGGAATATTCAAGATCTGTCTCACCTGAGGGTAGAAGAAGGTACAGTCGAGAAAGATCATATTCACAGCATAGTAGAGAGAGGTCGTTTTCACGTTCCCCACCCTATAATGGGGGTTCAAGGAGCCGTAGTCAGAGTCCAGCAATGGGCCCTGGCCCTGGCCGCAGCAGAAGTCCAAGTTCAAACCGTGGTGATGCAAGGGAATCAGCTCGTGCCAGGTCCCCCAGTCAGTGA 810 0.5185 MREGGEERVNLERKREIRDMRGRSYSPSPPPRYSRRGGRSPSPRGRYPPRGSRDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPNEMRSRERRGRFYDRRRSPPRYSRSPRYSPSPPPRHGSRSRSRDYYSPPPKRREYSRSVSPEGRRRYSRERSYSQHSRERSFSRSPPYNGGSRSRSQSPAMGPGPGRSRSPSSNRGDARESARARSPSQ* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2375 269 MobiDBLite consensus disorder prediction 177 218 - -
Apr10g2375 269 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 20 249 - -
Apr10g2375 269 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 20 249 - -
Apr10g2375 269 MobiDBLite consensus disorder prediction 138 269 - -
Apr10g2375 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 135 IPR000504 GO:0003723
Apr10g2375 269 SMART rrm1_1 58 131 IPR000504 GO:0003723
Apr10g2375 269 MobiDBLite consensus disorder prediction 138 161 - -
Apr10g2375 269 MobiDBLite consensus disorder prediction 1 56 - -
Apr10g2375 269 MobiDBLite consensus disorder prediction 219 252 - -
Apr10g2375 269 Gene3D - 2 149 IPR012677 -
Apr10g2375 269 SUPERFAMILY RNA-binding domain, RBD 56 162 IPR035979 GO:0003676
Apr10g2375 269 MobiDBLite consensus disorder prediction 1 22 - -
Apr10g2375 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 128 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2375 Apr-Chr10 35511089 35512904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2375 57 170 Eukaryotic Initiation Factors Gene Family AT2G36660 30.435 2.11e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2375 K12900 - gmx:100775883 308.531