Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr10g2375 | ATGAGGGAGGGCGGCGAAGAGAGAGTGAATTTGGAGAGGAAGAGAGAGATTAGAGATATGAGAGGAAGAAGTTACAGTCCGTCGCCTCCGCCGCGTTATAGCAGAAGAGGAGGGAGGAGTCCGAGCCCCAGAGGGCGGTATCCTCCCCGTGGGAGTAGGGATCTTCCTACCAGCCTTCTTGTTCGTAACCTTCGCCATGACTGTAGGCCCGAAGATCTTCGGCGTCCTTTTGGTCAATTTGGTCCTCTCAAGGATATTTACCTTCCCAAGGATTATTACACTGGAGAACCCCGTGGTTTTGGTTTTGTGCAATACGTGGATCCTGCCGATGCTGCCGATGCCAAATATCACATGGATGGTCAAATTCTTCTTGGTCGTGAGTTGACAGTTGTCTTTGCTGAGGAGAATAGAAAGAAGCCAAATGAGATGAGGTCCAGAGAGAGAAGGGGTCGATTTTATGATCGAAGGAGGTCTCCTCCTCGTTACTCCCGTTCGCCCCGTTACTCTCCATCTCCACCGCCGCGCCATGGATCTCGTTCTCGCTCTCGTGACTATTATTCCCCTCCTCCTAAACGAAGGGAATATTCAAGATCTGTCTCACCTGAGGGTAGAAGAAGGTACAGTCGAGAAAGATCATATTCACAGCATAGTAGAGAGAGGTCGTTTTCACGTTCCCCACCCTATAATGGGGGTTCAAGGAGCCGTAGTCAGAGTCCAGCAATGGGCCCTGGCCCTGGCCGCAGCAGAAGTCCAAGTTCAAACCGTGGTGATGCAAGGGAATCAGCTCGTGCCAGGTCCCCCAGTCAGTGA | 810 | 0.5185 | MREGGEERVNLERKREIRDMRGRSYSPSPPPRYSRRGGRSPSPRGRYPPRGSRDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPNEMRSRERRGRFYDRRRSPPRYSRSPRYSPSPPPRHGSRSRSRDYYSPPPKRREYSRSVSPEGRRRYSRERSYSQHSRERSFSRSPPYNGGSRSRSQSPAMGPGPGRSRSPSSNRGDARESARARSPSQ* | 270 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr10g2375 | 269 | MobiDBLite | consensus disorder prediction | 177 | 218 | - | - | |
Apr10g2375 | 269 | PANTHER | SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A | 20 | 249 | - | - | |
Apr10g2375 | 269 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 20 | 249 | - | - | |
Apr10g2375 | 269 | MobiDBLite | consensus disorder prediction | 138 | 269 | - | - | |
Apr10g2375 | 269 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 57 | 135 | IPR000504 | GO:0003723 | |
Apr10g2375 | 269 | SMART | rrm1_1 | 58 | 131 | IPR000504 | GO:0003723 | |
Apr10g2375 | 269 | MobiDBLite | consensus disorder prediction | 138 | 161 | - | - | |
Apr10g2375 | 269 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
Apr10g2375 | 269 | MobiDBLite | consensus disorder prediction | 219 | 252 | - | - | |
Apr10g2375 | 269 | Gene3D | - | 2 | 149 | IPR012677 | - | |
Apr10g2375 | 269 | SUPERFAMILY | RNA-binding domain, RBD | 56 | 162 | IPR035979 | GO:0003676 | |
Apr10g2375 | 269 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Apr10g2375 | 269 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 59 | 128 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr10g2375 | Apr-Chr10 | 35511089 | 35512904 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr10g2375 | 57 | 170 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 30.435 | 2.11e-08 | 52.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr10g2375 | K12900 | - | gmx:100775883 | 308.531 |