Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr10g2370 | ATGCGAACTTCATGGGCTGATTTGGCTGCAAATTCCGCAGCTGAAAATGCACCTCCTCCCATCAACTCCACGGCTCCTTCGCGGCCCGTTTACGTCCCTCCGCATCTCAGGAACCGTCCACCATCAGCAGAATCCCCTGCTCCACCATCAAGTGCATCTGCTTCTGCATCTGCATCTGGTAGTAATGCTGGATCACGTTGGGGTACGCCCAGAAACGAGTACCGTTCGGGCAGTGGTCGCGGCAGTGGATGGGGGAACAGAAGTAGTGGTTGGGATCGCGGCAGGGAGCGCGAAGTGAACCCCTTTGGCGATCAGGAGGATGCTGAAGAGGCGTTTGGTGAGCAGGAAAATACAGGAATAAATTTTGATGCGTATGAGGACATTCCTGTGGAAACCAGCGGCGAAAACGTGCCTCAGCCTGTGAATACATTCGCGGAGATTGACTTGGGGGAAGCACTTAATCAGAATATCAGACGGTGCAAATATGTTAAGCCAACGCCTGTTCAGCGGCATGCCATACCCATATCCCTTGCCGGCCGGGATTTGATGGCTTGTGCGCAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCCATTATCAGTGGGATTATGAGGGGCCAACCCGTGCAGAGGCCTCCTCGCGTGGTGCGTACAGTGTATCCACTTGCCCTTGTTCTATCACCAACTAGGGAGCTATCAATGCAAATACATGAAGAGGCTAGGAAGTTCTCCTACCAGACAGGGGTTAGGGTGGTTGTTGCCTATGGTGGAGCTCCAATAAACCAGCAGCTACGGGATCTTGAGAGGGGGGTGGATATTCTCGTTGCAACTCCTGGAAGATTGGTAGATTTGCTGGAGAGAGCTAGAGTCTCATTGCAGATGATCAGATATCTGGCCTTAGATGAGGCTGATAGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGTCAGACAGACTTTGCTGTTTAGTGCCACATTTCCAAAAGAGATACAGAGACTAGCATCTGATTTCCTTTCAAAATATGTGTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAATCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCACAGAGGGCTAATGGTGTACAAGGAAAGCAAGCTTTGACCCTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTAGAGCATTGGTTGTGTCGTAATAGTTTTCCAGCAACTACTATTCATGGTGACAGGACCCAACAGGAAAGAGAATTGGCATTAAAGTCATTTAAAAGTGGGAACACCCCCATATTGGTTGCGACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTTAATTTTGACCTTCCTAATGATATTGATGATTATGTACACCGCATTGGAAGGACAGGGCGAGCAGGAAAGAAAGGCCTGGCAACTGCATTCTTTAATGACAATAATGCGTCCCTGGCAAGGGCTTTAGCAGATCTAATGCAAGAAGCTAATCAAGAAGTACCTGCTTGGCTCTCACGGTACGCTGCTCGATCTTCCTTTGGTGGTGGAAGGAACCGTCGATCAGGAGGAGGTCGTTTTGGTGGCCGTGATTTTCGAAGAGAAGGTTCTTTTAATAGGGGTGGTTCTGATTACTACAGTGCAGGAAACAACATTGGTGGATACGGTGCTTCTGGTGGATATGCTGGAGGATATGGCCCTGGGGTAACCAGTGCATGGGACTGA | 1806 | 0.4889 | MRTSWADLAANSAAENAPPPINSTAPSRPVYVPPHLRNRPPSAESPAPPSSASASASASGSNAGSRWGTPRNEYRSGSGRGSGWGNRSSGWDRGREREVNPFGDQEDAEEAFGEQENTGINFDAYEDIPVETSGENVPQPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRVVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTLLFSATFPKEIQRLASDFLSKYVFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCRNSFPATTIHGDRTQQERELALKSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARALADLMQEANQEVPAWLSRYAARSSFGGGRNRRSGGGRFGGRDFRREGSFNRGGSDYYSAGNNIGGYGASGGYAGGYGPGVTSAWD* | 602 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr10g2370 | 601 | Pfam | Helicase conserved C-terminal domain | 382 | 497 | IPR001650 | - | |
Apr10g2370 | 601 | CDD | DEADc_DDX3_DDX4 | 143 | 364 | IPR044763 | GO:0003724|GO:0005524 | |
Apr10g2370 | 601 | CDD | SF2_C_DEAD | 370 | 506 | - | - | |
Apr10g2370 | 601 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 223 | 515 | IPR027417 | - | |
Apr10g2370 | 601 | SMART | ultradead3 | 161 | 373 | IPR014001 | - | |
Apr10g2370 | 601 | Gene3D | - | 361 | 540 | IPR027417 | - | |
Apr10g2370 | 601 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 173 | 358 | IPR014001 | - | |
Apr10g2370 | 601 | MobiDBLite | consensus disorder prediction | 541 | 562 | - | - | |
Apr10g2370 | 601 | MobiDBLite | consensus disorder prediction | 22 | 47 | - | - | |
Apr10g2370 | 601 | MobiDBLite | consensus disorder prediction | 48 | 85 | - | - | |
Apr10g2370 | 601 | Pfam | DEAD/DEAH box helicase | 166 | 347 | IPR011545 | GO:0003676|GO:0005524 | |
Apr10g2370 | 601 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 142 | 170 | IPR014014 | GO:0003724 | |
Apr10g2370 | 601 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 44 | 573 | - | - | |
Apr10g2370 | 601 | SMART | helicmild6 | 416 | 497 | IPR001650 | - | |
Apr10g2370 | 601 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Apr10g2370 | 601 | Gene3D | - | 98 | 360 | IPR027417 | - | |
Apr10g2370 | 601 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 369 | 536 | IPR001650 | - | |
Apr10g2370 | 601 | MobiDBLite | consensus disorder prediction | 1 | 103 | - | - | |
Apr10g2370 | 601 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN | 44 | 573 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr10g2370 | Apr-Chr10 | 35478056 | 35483949 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr10g2370 | 139 | 529 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 32.398 | 7.35e-64 | 214 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr10g2370 | K11594 | - | gmx:100795756 | 943.725 |