Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2370 ATGCGAACTTCATGGGCTGATTTGGCTGCAAATTCCGCAGCTGAAAATGCACCTCCTCCCATCAACTCCACGGCTCCTTCGCGGCCCGTTTACGTCCCTCCGCATCTCAGGAACCGTCCACCATCAGCAGAATCCCCTGCTCCACCATCAAGTGCATCTGCTTCTGCATCTGCATCTGGTAGTAATGCTGGATCACGTTGGGGTACGCCCAGAAACGAGTACCGTTCGGGCAGTGGTCGCGGCAGTGGATGGGGGAACAGAAGTAGTGGTTGGGATCGCGGCAGGGAGCGCGAAGTGAACCCCTTTGGCGATCAGGAGGATGCTGAAGAGGCGTTTGGTGAGCAGGAAAATACAGGAATAAATTTTGATGCGTATGAGGACATTCCTGTGGAAACCAGCGGCGAAAACGTGCCTCAGCCTGTGAATACATTCGCGGAGATTGACTTGGGGGAAGCACTTAATCAGAATATCAGACGGTGCAAATATGTTAAGCCAACGCCTGTTCAGCGGCATGCCATACCCATATCCCTTGCCGGCCGGGATTTGATGGCTTGTGCGCAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCCATTATCAGTGGGATTATGAGGGGCCAACCCGTGCAGAGGCCTCCTCGCGTGGTGCGTACAGTGTATCCACTTGCCCTTGTTCTATCACCAACTAGGGAGCTATCAATGCAAATACATGAAGAGGCTAGGAAGTTCTCCTACCAGACAGGGGTTAGGGTGGTTGTTGCCTATGGTGGAGCTCCAATAAACCAGCAGCTACGGGATCTTGAGAGGGGGGTGGATATTCTCGTTGCAACTCCTGGAAGATTGGTAGATTTGCTGGAGAGAGCTAGAGTCTCATTGCAGATGATCAGATATCTGGCCTTAGATGAGGCTGATAGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGTCAGACAGACTTTGCTGTTTAGTGCCACATTTCCAAAAGAGATACAGAGACTAGCATCTGATTTCCTTTCAAAATATGTGTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAATCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCACAGAGGGCTAATGGTGTACAAGGAAAGCAAGCTTTGACCCTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTAGAGCATTGGTTGTGTCGTAATAGTTTTCCAGCAACTACTATTCATGGTGACAGGACCCAACAGGAAAGAGAATTGGCATTAAAGTCATTTAAAAGTGGGAACACCCCCATATTGGTTGCGACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTTAATTTTGACCTTCCTAATGATATTGATGATTATGTACACCGCATTGGAAGGACAGGGCGAGCAGGAAAGAAAGGCCTGGCAACTGCATTCTTTAATGACAATAATGCGTCCCTGGCAAGGGCTTTAGCAGATCTAATGCAAGAAGCTAATCAAGAAGTACCTGCTTGGCTCTCACGGTACGCTGCTCGATCTTCCTTTGGTGGTGGAAGGAACCGTCGATCAGGAGGAGGTCGTTTTGGTGGCCGTGATTTTCGAAGAGAAGGTTCTTTTAATAGGGGTGGTTCTGATTACTACAGTGCAGGAAACAACATTGGTGGATACGGTGCTTCTGGTGGATATGCTGGAGGATATGGCCCTGGGGTAACCAGTGCATGGGACTGA 1806 0.4889 MRTSWADLAANSAAENAPPPINSTAPSRPVYVPPHLRNRPPSAESPAPPSSASASASASGSNAGSRWGTPRNEYRSGSGRGSGWGNRSSGWDRGREREVNPFGDQEDAEEAFGEQENTGINFDAYEDIPVETSGENVPQPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRVVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTLLFSATFPKEIQRLASDFLSKYVFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCRNSFPATTIHGDRTQQERELALKSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARALADLMQEANQEVPAWLSRYAARSSFGGGRNRRSGGGRFGGRDFRREGSFNRGGSDYYSAGNNIGGYGASGGYAGGYGPGVTSAWD* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2370 601 Pfam Helicase conserved C-terminal domain 382 497 IPR001650 -
Apr10g2370 601 CDD DEADc_DDX3_DDX4 143 364 IPR044763 GO:0003724|GO:0005524
Apr10g2370 601 CDD SF2_C_DEAD 370 506 - -
Apr10g2370 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 515 IPR027417 -
Apr10g2370 601 SMART ultradead3 161 373 IPR014001 -
Apr10g2370 601 Gene3D - 361 540 IPR027417 -
Apr10g2370 601 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 358 IPR014001 -
Apr10g2370 601 MobiDBLite consensus disorder prediction 541 562 - -
Apr10g2370 601 MobiDBLite consensus disorder prediction 22 47 - -
Apr10g2370 601 MobiDBLite consensus disorder prediction 48 85 - -
Apr10g2370 601 Pfam DEAD/DEAH box helicase 166 347 IPR011545 GO:0003676|GO:0005524
Apr10g2370 601 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Apr10g2370 601 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 44 573 - -
Apr10g2370 601 SMART helicmild6 416 497 IPR001650 -
Apr10g2370 601 MobiDBLite consensus disorder prediction 1 21 - -
Apr10g2370 601 Gene3D - 98 360 IPR027417 -
Apr10g2370 601 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 536 IPR001650 -
Apr10g2370 601 MobiDBLite consensus disorder prediction 1 103 - -
Apr10g2370 601 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 44 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2370 Apr-Chr10 35478056 35483949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2370 139 529 Eukaryotic Initiation Factors Gene Family AT3G19760 32.398 7.35e-64 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2370 K11594 - gmx:100795756 943.725