Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2355 ATGGCATTCTGTAGTAAGGTTGGAAATCTCTTGAGGCAGGGTGGTGCTAACAGCACACAATCACCTGTTGCATCCATGCTCAATTATATTCGCTGCATGTCTTCAAGCAAGCTTTTTGTTGGAGGCCTTTCATATGGAGTTGATGACCAGTCTCTTAGGGACGCGTTTGCAGGATTTGGAGATGTGGTTGAGGCAAGGGTTATAACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCAATGATGAGTCTGCAAGTTCAGCAATCTCTGCTATGGATGGGCAGGATTTAAATGGGCGAAACATCCGAGTTTCCTATGCAAATGATAGACCTTCTGCTCCTCGTTCCCCTGGTGGTGGTGAGTATGGAGGTGGTGGCTTTACTTCTCGCAACAGTGAATTCTCGCTGTTTTGTCAAGAAATTCATTTAGGGTTGCCACTCAAGTGGTAA 465 0.4538 MAFCSKVGNLLRQGGANSTQSPVASMLNYIRCMSSSKLFVGGLSYGVDDQSLRDAFAGFGDVVEARVITDRDTGRSRGFGFVNFSNDESASSAISAMDGQDLNGRNIRVSYANDRPSAPRSPGGGEYGGGGFTSRNSEFSLFCQEIHLGLPLKW* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2355 154 SMART rrm1_1 37 110 IPR000504 GO:0003723
Apr10g2355 154 SUPERFAMILY RNA-binding domain, RBD 33 136 IPR035979 GO:0003676
Apr10g2355 154 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Apr10g2355 154 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Apr10g2355 154 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 131 - -
Apr10g2355 154 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 131 - -
Apr10g2355 154 Gene3D - 30 140 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2355 Apr-Chr10 35385752 35387264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2355 14 147 Eukaryotic Initiation Factors Gene Family AT4G34110 35.821 2.92e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2355 - - gmx:100499841 224.557