Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2348 ATGGAAGGATCAGGATCAGGATCGGGATCAGGTCCGGCACCGTTCCTGTTGAAGACGTACGAGATGGTGGATGATTCATCGACGGAGGAGATTGTGTCATGGAGCTCCACCAACGACTCCTTCATCGTTTGGAATCCCTCCGATTTCTCTCGCCTTCTTCTTCCCACCTTTTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTTAATACCTATGGATTTCGAAAAGTGCACCCTGAGAGATGGGAGTTTGCTAATGAAGATTTTGTGAAAGATCAAAAGCATCGTCTTAAGAATATTCATCGCAGGAAACCTATTCACAGTCACACTCATCCTCCGGGTTCTGTTGTGGATCCTGAAAGGTCCGCATTTGAGGAACAAATTGAAAAACTTTCACACCACAAAACTACTATTGAATCCAATATATTTCGCTTCAAACAACACCATTCAGCTGCAAAGGGTCATCTTGAAGATCTACGCCAACGATTAGATGCTATGGAGAAGAGGCAGAAATATTTGCTCAACTTCTTTGAAAAAGCGCTTCAGAATCCTACTTTTGTTGAACGAATTTCTCGTAAGATTGAGTCCATGGATTTGTTGGCATATAACAAGAAAAGGCGATTGCCTCAACTTGATGATCATCACTTGCAACCTGTTTCTGACAGTAATGGAATGGAATTTAGAAATATTTCTCATCAGGATTTCACCAATAAACTCACACTGGAATTGTCACCAACTCCAACTGTTTCTGATATAAACTTGGTCTCATGTAGCACACACAGTTCAAATGAAGATGGAGAAAGCCCACATAAGATGCTATCTGAAGGAGAGCCAATACAACTGCATACTACAACATTTGCACCTGAAACAGCAATAGAGCTTGCAGAAGAAAATGGAGCATCTTTTACTTTTATAGATTCATGTTTATCACGAGCAGCAACAGCTACTGAGTGCCCCAAAGCAAACTCATTGGAACCGAATTGTGAAGAAGATGACAGTTATATATCCTGCCTTTTAAATCTAACTCTGGCATCTTCTCCATTACAAGTGAAGAGAAATTCATGCCCAGATAGATCACCCCACATAGACTGTCAAGAAATTGTTGGCAAATTGGCAGAATCAAAATTTTGTGCCAATGATGATAAAGATTCTGATGTTGGAGCTTCTTCAAGCAGAAATCTGACAAACGAGGTTACTAATTTAGCTTCCTCACATGAAACTCCTACTCCTAGTAACAACCAAGGGACCCCATCTGCTCCAGTTAGAGTAAATGATGTGTTCTGGGAACAGTTCCTTACTGAAAGACCAGGATGTTCGGACAATGAAGAGCCTATGCCGAACTACAAAGCAAATGCATATGCTGAGCAAGATGAAGGGCGATCACTTTGTGGAATCTCTGGAAACGTTGTGAATATGGATCATCTCACACTCTGA 1437 0.4141 MEGSGSGSGSGPAPFLLKTYEMVDDSSTEEIVSWSSTNDSFIVWNPSDFSRLLLPTFFKHNNFSSFIRQLNTYGFRKVHPERWEFANEDFVKDQKHRLKNIHRRKPIHSHTHPPGSVVDPERSAFEEQIEKLSHHKTTIESNIFRFKQHHSAAKGHLEDLRQRLDAMEKRQKYLLNFFEKALQNPTFVERISRKIESMDLLAYNKKRRLPQLDDHHLQPVSDSNGMEFRNISHQDFTNKLTLELSPTPTVSDINLVSCSTHSSNEDGESPHKMLSEGEPIQLHTTTFAPETAIELAEENGASFTFIDSCLSRAATATECPKANSLEPNCEEDDSYISCLLNLTLASSPLQVKRNSCPDRSPHIDCQEIVGKLAESKFCANDDKDSDVGASSSRNLTNEVTNLASSHETPTPSNNQGTPSAPVRVNDVFWEQFLTERPGCSDNEEPMPNYKANAYAEQDEGRSLCGISGNVVNMDHLTL* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2348 478 Gene3D - 9 105 IPR036388 -
Apr10g2348 478 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr10g2348 478 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr10g2348 478 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr10g2348 478 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 7 469 - -
Apr10g2348 478 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr10g2348 478 Coils Coil 150 170 - -
Apr10g2348 478 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr10g2348 478 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 469 IPR027725 -
Apr10g2348 478 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr10g2348 478 SUPERFAMILY "Winged helix" DNA-binding domain 10 104 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2348 Apr-Chr10 35346761 35350440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2348 15 478 HSF AT4G13980 48.950 3.46e-144 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr10g2348 HSF_DNA-bind 9e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2348 K09419 - gmx:100816484 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2348 10 35346761 35350440 Apr10g2348 10 35346761 35350440 ECH