Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2332 ATGGTTTCAATTCTCAAATTTCGCAGCATCTTCTTCATCACACTGGAATCCACTAGCGGGCTAACTTATGGTGCCTCGAGACATTGTCATTTTGCATCAGAAGATTGGGGTAAAAACCCCAAATTGATACCAAACGAGAAGCCAAATAGGGTGGGGCTTTTCTGGGACTTGGACAATAAACCACCCAACTCAATCCCACCCTATGAAGTTGCCAATAAGCTTAGAGTAGCTGCATCTTCCTTTGGGGTTGTTAGGTATACGGTGGCTTATGCAAATAGCCACACTTTTAGCCATGTTCCTCAAGTTGTTAGAGAGAGGAGAAAAGAGAGGCAACTGTTGAATCGTTTAGAGAATAAGGGTGTTATCAAGCCAAATGAACCTTATCTTTGTCGTGTTTGTGGGAGGAAATTTTATACTAATGAAAAGCTTGTTAACCATTTCAAGCAACTGCATGAGCGTGAGCATGTGAAAAGGATGAACCGAATAGAGTCAGCTAGGGGGAGCAGGAGGGTGAAGTTGGTGGCTAAGTATTCTATGAAAATGGAGAAGTATAAGAAGGCTGCAAGTGCTGTTCTGACTCCCAAAGTTGGTTATGGTTTGGCAGATGAGCTAAAACGGGCAGGGTTTTGGGTTCAAACTGTGTTGGATAAGCCACAAGCTGCAGATCTTGCATTGAAAAGTCACATGGTGGATATCATGGATCATAGGAGGGTTGAGTGTGTGGTACTTGTATCTGATGATTCTGATTTTGTTGATGTGATAAAGGAAGCAAGGCTAAGATGTTTGAAGACTGTCGTCATTGGTGATACTGATGATGGTGTCTTGAAAAGGACTGCTGATGCTGCCTTTTCTTGGGAGGAAATTCTGATGGGGAAGGCTAAAAAGGAGGCTGTTTCAGTTGTGAAAAACTGGAAGGATCGTGATATCTTGAAAAGGTTAGAGTGGAGTTACAATCCAGATGTTGATAAGAAGAAATTGAATCTGGAAGATACCATTGCCGAATCATTTGAAGATGGTAATATGGATGATATCTGTGGTGAAGCTGATGATGCCCATAAGGACGACAAAGGTTCTTGGTGGGAATTAGATTCTGATGATGATGTTCCAAATGGACAGTCAAGCAAATTATCCATCTTATCTGTGAATAGGAGAAGCTAA 1158 0.418 MVSILKFRSIFFITLESTSGLTYGASRHCHFASEDWGKNPKLIPNEKPNRVGLFWDLDNKPPNSIPPYEVANKLRVAASSFGVVRYTVAYANSHTFSHVPQVVRERRKERQLLNRLENKGVIKPNEPYLCRVCGRKFYTNEKLVNHFKQLHEREHVKRMNRIESARGSRRVKLVAKYSMKMEKYKKAASAVLTPKVGYGLADELKRAGFWVQTVLDKPQAADLALKSHMVDIMDHRRVECVVLVSDDSDFVDVIKEARLRCLKTVVIGDTDDGVLKRTADAAFSWEEILMGKAKKEAVSVVKNWKDRDILKRLEWSYNPDVDKKKLNLEDTIAESFEDGNMDDICGEADDAHKDDKGSWWELDSDDDVPNGQSSKLSILSVNRRS* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2332 385 MobiDBLite consensus disorder prediction 367 385 - -
Apr10g2332 385 CDD PIN_LabA-like 138 269 - -
Apr10g2332 385 Gene3D - 43 289 - -
Apr10g2332 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 156 IPR013087 -
Apr10g2332 385 Pfam NYN domain 200 280 IPR021139 GO:0004540
Apr10g2332 385 SUPERFAMILY beta-beta-alpha zinc fingers 124 154 IPR036236 -
Apr10g2332 385 ProSitePatterns Zinc finger C2H2 type domain signature. 130 151 IPR013087 -
Apr10g2332 385 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 39 368 - -
Apr10g2332 385 MobiDBLite consensus disorder prediction 339 385 - -
Apr10g2332 385 MobiDBLite consensus disorder prediction 345 363 - -
Apr10g2332 385 PANTHER - 39 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2332 Apr-Chr10 35241187 35243406 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2332 45 375 C2H2 Transcription Factor Family AT4G12240 59.940 7.00e-145 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr10g2332 NYN 4.8e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2332 - - lja:Lj3g3v3326020.1 613.994