Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2327 ATGGTTTCAATTCTCAAATTTCGCAGCATCTTCTTCATCACACTGGAATCCACTAGCGGGCTAACGTACGGTGCCTCGAGACATTGTCATTTTGCATCAGAAGATTGGGGTAAAACCCCCAAATTGATACCAAACGAGAAGCCAAATAGGGTGGGGCTCTTCTGGGACTTGGACAATAAACCACCCAACTCAATCCCACCCTATGAAGTTGCCAATAAGCTTAGAGTAGCTGCATCTTCCTTTGGGGTTGTTAGGTATACGGTGGCTTATGCAAATAGCCACACTTTTAGCCATGTTCCTCAAGTTGTTAGAGAGAGGAGAAAAGAGAGGCAACTGTTGAATCGTTTAGAGAATAAGGGTGTTATCAAGCCAAATGAACCTTATCTTTGTCGTGTTTGTGGGAGGAAATTTTATACTAATGAAAAGCTTGTTAACCATTTCAAGCAACTGCATGAGCGTGAGCATGTGAAAAGGATGAACCAAATAGAGTCAGCTAGGGGGAGCAGGAGGGTGAAGTTGGTGGCTAAGTATTCTATGAAAATGGAGAAGTATAAGAAGGCTGCAAGTGCTGTTCTGACTCCCAAAGTTGGGTATGGTTTGGCAGATGAGCTAAAACGGGCAGGGTTTTGGGTTCAAACTGTGTTGGATAAGCCACAAGCTGCAGATCTTGCATTGAAAAGTCACATGGTGGATATCATGGATCATAGGAGGGTTGAGTGTGTGGTACTTGTATCTGATGATTCTGATTTTGTTGATGTGATAAAGGAAGCAAGGCTAAGGTGTTTGAAGACTGTGGTCATTGGTGATACTGATGATGGTGTCTTGAAAAGGACTGCTGATACTGCTTTTTCTTGGGAGGAAATTCTGATGGGGAAGGCTAAAAAGGAGGCTGTTTCAGTTGTGAAAAACTGGAAGGATCGTGATATCTTGAAAAGGTTAGAGTGGAGTTACAATCCAGATGTTGATAAGAAGAAATTGAATCTGGAAGATACCATTGCCGAATCATTTGAAGATGTTAATATGGATGATATCTGTGGTGAAGCTGATGATACCTATAACGATGACAAAGGTTCTTGGTGGGAATTAGATTCTGATGATGATGTTCCAAATGGACATTCAAGCAAACTTAGTCATGTGTTGGGATATCCCATTCAACAACAGACTATTTACTCTTAA 1176 0.4158 MVSILKFRSIFFITLESTSGLTYGASRHCHFASEDWGKTPKLIPNEKPNRVGLFWDLDNKPPNSIPPYEVANKLRVAASSFGVVRYTVAYANSHTFSHVPQVVRERRKERQLLNRLENKGVIKPNEPYLCRVCGRKFYTNEKLVNHFKQLHEREHVKRMNQIESARGSRRVKLVAKYSMKMEKYKKAASAVLTPKVGYGLADELKRAGFWVQTVLDKPQAADLALKSHMVDIMDHRRVECVVLVSDDSDFVDVIKEARLRCLKTVVIGDTDDGVLKRTADTAFSWEEILMGKAKKEAVSVVKNWKDRDILKRLEWSYNPDVDKKKLNLEDTIAESFEDVNMDDICGEADDTYNDDKGSWWELDSDDDVPNGHSSKLSHVLGYPIQQQTIYS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2327 391 CDD PIN_LabA-like 138 269 - -
Apr10g2327 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 156 IPR013087 -
Apr10g2327 391 PANTHER - 40 368 - -
Apr10g2327 391 Gene3D - 43 289 - -
Apr10g2327 391 Pfam NYN domain 201 281 IPR021139 GO:0004540
Apr10g2327 391 ProSitePatterns Zinc finger C2H2 type domain signature. 130 151 IPR013087 -
Apr10g2327 391 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 40 368 - -
Apr10g2327 391 SUPERFAMILY beta-beta-alpha zinc fingers 124 154 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2327 Apr-Chr10 35209522 35211475 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2327 45 375 C2H2 Transcription Factor Family AT4G12240 60.241 4.79e-145 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr10g2327 NYN 4.2e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2327 - - lja:Lj3g3v3326020.1 603.208