Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2320 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGACAAGTGACCTTCGCGAAACGAAGAAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGCTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGCAACTATGGAGCTCCTGAAGCCAATGTGTCAACAAGGGAAGCCTTGGTATTGTTAAGCAGTCAACAGGAATACTTGAAGCTGAAAGCACGTTATGAAGCTCTACAGCGTTCTCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTTAGCAGCAAAGAGCTTGAATCACTTGAAAGACAGCTAGATTCATCTTTGAAGCAAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTCTCTGATCTTCAACGCAAGGAACACTTGCTAAGTGAGGCAAACACAGCTCTCAGACAAAGGTTGGAAGGGTATCAAATAAATCCACTCCAAATGAATCCCAGTGCTGAAGATATGGGATATGGCCGCCATCCAGGTCAAACCCAGGGCGATCTCTTTCAACCATTGGAGTGTGAGCCAACGTTACAAATTGGATATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGCCCAAGCATGAATAATTACATGGCAGGATGGTTACCATGA 726 0.4559 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALVLLSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANTALRQRLEGYQINPLQMNPSAEDMGYGRHPGQTQGDLFQPLECEPTLQIGYQPDPVSVVTAGPSMNNYMAGWLP* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2320 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Apr10g2320 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr10g2320 241 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr10g2320 241 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Apr10g2320 241 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Apr10g2320 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr10g2320 241 Coils Coil 127 147 - -
Apr10g2320 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr10g2320 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr10g2320 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr10g2320 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr10g2320 241 Pfam K-box region 93 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr10g2320 241 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Apr10g2320 241 Coils Coil 90 110 - -
Apr10g2320 241 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 228 - -
Apr10g2320 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2320 Apr-Chr10 35166327 35171832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2320 1 241 MADS-box Gene Family AT1G24260 75.203 6.96e-120 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr10g2320 K-box 5.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2320 - - gmx:100805078 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2320 10 35166327 35171832 Apr2g1661 2 22258184 22266437 PCT