Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2317 ATGATTGGTGAATCTGAAGCAGAACCAAACAAGTCCTTAGTCTCCGTTGCAAATGCAACTTCTCCGTTTCTAATTCTTCTTTCCTTTACGCCATCAATTAATATGCCACCTGGTTTGGAATACAACATTGATGATCTGTTTCAAGAAGCTAAGAGAAGATGGCTCAAGCCTGTAGAAGTGCTTTACATTTTACAGAATCACAAGAAGTGCGAGTTCACTGACAGGCCCCTTCATCAACCAACTGGAGGATCCCTATTTCTGTTTAATAGAAGAGTTATGCGTTTCTTCCGTAAAGATGGTCATAACTGGCGGAAGAAAAAAGATGGAAGAACTGTGGGAGAAGCACATGAACGGCTTAAGGTTGGAAATGTTGAAATCCTAAACTGTTACTATGCACATGGAGAGGAGAACCGTACTTTTCAGAGACGGAGCTATTGGATATTAGACCCGGAATATGAGCATATTGTTCTTGTGCATTATAGAGAAACAAGTGAGGGGAATTCTGAACCTGTCACACAGTTGTTACCAGGTTCCTCTCCTGTGTTCAGTCAGAGTCATAGCTCACATACTACTCATAACCGAGGGACAACATCCATGTTTGATGATTCATATGAGCCTAATCAGAATTTCTCCAGTCTTGGGTCAGTAGAAGTTACCTCCTCTGACACACAAGCTTTACGCCAATTGGAAGAGAACTTGAGTTTGAATGAGGAAATTTATGACACTGATAAGTATTATCAAGAATTACTTGACGACTATCCTGACGGAAATGAAAAAGCTATGTCCTGGATGGAGGTGCTGGAATCGTGTAAGCCCTCATCTGTGACCAAGTTACCAGATCAACATGCATACCAGGCATTTGAAAATGTGATCATTATTGGGACATTTCTCTGCTCTTCCTCGGATTCTAACTGGGCTTGTATGTTTGGTGATGTTGAAGTTCCCGCCGAGATAATTCAGGATGGCGTAATCTGTTGTGAAGCTCCGTTCGGTCTACTTGGAAAGGTTAATCTGTGCATTACTTCAGGAAATAGGGAGCCATGCAGTGAAGTCAGAGAGTTTGAGTTTCGAAAGAAGACCACTAGTTGCACTCGCTGTAATTCATTGGAAACAGAAACCGGTAGTAGTCCAAAAGAGCTTTTATTACTTGTTCGATTTGCAGAGATGCTCCTTTCTGCTTCAACTACAAAGGATGACAGCATAGATTATGGAAATCATCCTTCAAGAAAACAGAAAGATGATGATGATGATGATTCATGGAGTCATATTATAGACACACTGTTGGCTGGCAGTGGAACATCATCTGGTACTGTTAACTGGCTTCTTGAAGAGTTGCTGAAGGATAAGCTGCAACTCTGGCTTTCTAGCAGATCTCATGAAAGAGATGAAGGGACGGGCTGCTCTTTGTCCAAGAAAGAGCAGGGAATTATACACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCCATTCTAAGTTGTGGTGTGAATATAAATTTTCGGGACATCAATGGACGCACTGCTCTTCATTGGGCTGCATGGTTTGGGAGGGAAAAAATGGTTGCTTCACTTATAGCTTCGGGTGCATCTGCTGGAGCTGTGACAGATCCAACTTCACAAGATCCAACTGGTAAAACTGCTGCATCTATTGCAGCCAGCCATGGCCATAAGGGACTGGCAGGTTATCTTTCAGAGGTAGATCTAACAAGCCATCTGTCATCCCTCACATTGGAAAAGAATGAGATTTATGAAGACTCTTCACTTGATGTCGAGTTAACTGTCAATAGTGTCTCTAAGGAAAATTTTGTAGCCAGTGAGGATCAGGTTTCACTAAAAGCTTCATTAGATGCTGTCAGAAATGCAGCTCAGGCAGCTGCACGGATACTGGCTGCTTTTCGTGCACATTCTTTCAGAAAGCAAAAAGAAAGAGAAGCTGCCGCTGCTGCAGGTCTAGATGGGTATGGTATTGCTGCAGGTGGCATTGATGATACCATTTCAGTGCTTTCTGCTCGGAGCTTACATGATTGCAATCTAGCTGCCTTATCAATTCAGAAGAAATTTCGAGGTTATAAAGGTCGCCAAGAATTCTTAGCATTCCGCAGAAAAGTAGTTAAGATACAGGCTTGTGTGAGGGGTTACCAGGTTCGGAAGCATTACAAGGTAATATTATGGGCAGTTAGAATCATGGACAGGGTTGTGCTACGATGGCGGAGAAAACGAGTTGGTTTACTAAGGGTTCAGCGAGAAGTGGAATCAGGTGAAGAAAGTGATGATGAAGATTTTCTTAAGGTGTTCCGAAAAGAGAAAGTACATGTAGCAATTGAAAGGGCTTTGAAGAGGGTGCTTTCCATGGTCCAGTCTACCGGTGCTCGTCAACAATATAGTCGCTTGCTTCAGATGTATCGTCAAGCCAAGGTTAAACATGGCAGCACGACTGATGAACCACCCTCATCAACCTCGGCTGCGGATGTTTCCAATATAGAAGATGATGATTTGTCTCAATTTCCCTGGGAAACGATCCTGTCTTCCTAG 2535 0.4296 MIGESEAEPNKSLVSVANATSPFLILLSFTPSINMPPGLEYNIDDLFQEAKRRWLKPVEVLYILQNHKKCEFTDRPLHQPTGGSLFLFNRRVMRFFRKDGHNWRKKKDGRTVGEAHERLKVGNVEILNCYYAHGEENRTFQRRSYWILDPEYEHIVLVHYRETSEGNSEPVTQLLPGSSPVFSQSHSSHTTHNRGTTSMFDDSYEPNQNFSSLGSVEVTSSDTQALRQLEENLSLNEEIYDTDKYYQELLDDYPDGNEKAMSWMEVLESCKPSSVTKLPDQHAYQAFENVIIIGTFLCSSSDSNWACMFGDVEVPAEIIQDGVICCEAPFGLLGKVNLCITSGNREPCSEVREFEFRKKTTSCTRCNSLETETGSSPKELLLLVRFAEMLLSASTTKDDSIDYGNHPSRKQKDDDDDDSWSHIIDTLLAGSGTSSGTVNWLLEELLKDKLQLWLSSRSHERDEGTGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGRTALHWAAWFGREKMVASLIASGASAGAVTDPTSQDPTGKTAASIAASHGHKGLAGYLSEVDLTSHLSSLTLEKNEIYEDSSLDVELTVNSVSKENFVASEDQVSLKASLDAVRNAAQAAARILAAFRAHSFRKQKEREAAAAAGLDGYGIAAGGIDDTISVLSARSLHDCNLAALSIQKKFRGYKGRQEFLAFRRKVVKIQACVRGYQVRKHYKVILWAVRIMDRVVLRWRRKRVGLLRVQREVESGEESDDEDFLKVFRKEKVHVAIERALKRVLSMVQSTGARQQYSRLLQMYRQAKVKHGSTTDEPPSSTSAADVSNIEDDDLSQFPWETILSS* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2317 844 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 289 840 - -
Apr10g2317 844 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 242 289 - -
Apr10g2317 844 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 35 241 - -
Apr10g2317 844 Gene3D - 677 724 - -
Apr10g2317 844 ProSiteProfiles Ankyrin repeat region circular profile. 505 531 - -
Apr10g2317 844 Gene3D Immunoglobulins 275 362 IPR013783 -
Apr10g2317 844 SMART ANK_2a 505 534 IPR002110 GO:0005515
Apr10g2317 844 SMART ANK_2a 544 573 IPR002110 GO:0005515
Apr10g2317 844 Gene3D - 400 570 IPR036770 -
Apr10g2317 844 PANTHER CALMODULIN-BINDING PROTEIN 289 840 - -
Apr10g2317 844 PANTHER CALMODULIN-BINDING PROTEIN 242 289 - -
Apr10g2317 844 PANTHER CALMODULIN-BINDING PROTEIN 35 241 - -
Apr10g2317 844 ProSiteProfiles IQ motif profile. 678 706 IPR000048 GO:0005515
Apr10g2317 844 Pfam Ankyrin repeats (3 copies) 487 565 IPR002110 GO:0005515
Apr10g2317 844 Pfam IQ calmodulin-binding motif 680 697 IPR000048 GO:0005515
Apr10g2317 844 Pfam IQ calmodulin-binding motif 701 721 IPR000048 GO:0005515
Apr10g2317 844 SUPERFAMILY E set domains 289 357 IPR014756 -
Apr10g2317 844 SMART iq_5 676 698 IPR000048 GO:0005515
Apr10g2317 844 SMART iq_5 699 721 IPR000048 GO:0005515
Apr10g2317 844 MobiDBLite consensus disorder prediction 806 832 - -
Apr10g2317 844 SMART CG_1_2 46 164 IPR005559 GO:0003677
Apr10g2317 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 668 729 IPR027417 -
Apr10g2317 844 ProSiteProfiles CG-1 DNA-binding domain profile. 43 169 IPR005559 GO:0003677
Apr10g2317 844 ProSiteProfiles Ankyrin repeat profile. 505 537 IPR002110 GO:0005515
Apr10g2317 844 Pfam CG-1 domain 49 162 IPR005559 GO:0003677
Apr10g2317 844 ProSiteProfiles IQ motif profile. 701 728 IPR000048 GO:0005515
Apr10g2317 844 SUPERFAMILY Ankyrin repeat 475 566 IPR036770 -
Apr10g2317 844 MobiDBLite consensus disorder prediction 811 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2317 Apr-Chr10 35150953 35159274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2317 279 837 CAMTA Transcription Factor Family AT1G67310 59.187 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Apr10g2317 CG-1 4e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2317 K21596 - gmx:100791430 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2317 10 35150953 35159274 Apr2g1665 2 22315240 22323287 PCT