Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2313 ATGGAGTGGAATGCAAAATCTCTGGGGCAATGGGACTGGGAGCACTTCTTCTTGAATACAAAAGCAACAGATGGTGAAGCAGATGGAGAAATCAACGTTGGAGCTTTGTATCCATCAGGTGGTAGTGCTTGTTCTGGCTCTGAACTAATACACGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCCAATAATTCATCATCAAATGGAGATAGCAAGATATCATCTATATTGACCCTTGAAGGTTCTCAAGATGATTCCAGTGGTAAGAAAGAATTATGCAAAGGCGAGGCAATTGAAACTTCTCCAGCAGCAGAACCATCTTCTGTTTCTGGTGAACCATTGCTTACTCTAAAGCTTGGCAAAAGATTCTACTTTGAAGATGTTTGCACAGCAAGTGATTCCAAGAAAGCATCTTCCTTTGAAGTTCCCATTTCATCAGGAAAGAAATGTAGAGCCAATAATCAGAATTTGCAGCATCCAATCTGTCAGGTGGAGGGTTGTGGCCTTAACCTCTCATCTGCTAAAGATTACCATCGCAAACACAGAGTTTGTGAAAGCCATTCCAAATCTCCGAGGGTTGTAATCTCTGGTTTGGATCGTAGATTTTGCCAGCAGTGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGCAGACGGCGTCTTTCGGATCACAATGCAAGGCGCCGCAAACCTCAGCCTGAAGCAGTCCAATTGAATCCATCAGTTTTGTCTTCATCACCCTATGCTATTGATGGGAGGCAAATAATGAGCCCATTTGCATTTTCAAGGAGTGCTACAAATTTAGCATGGCAAGACATACACTGCAGCAAGCTCCCCCAGACAAAAGATTTTCTCCCGAAGCCTGCAAAGGCCTTCAATAAGATACCAAATATTGTTGCTATGCTTTCAGATGATTCCAGTGGCCTTCTAACATCCAAAGACATAGCAACAAAGAGTATTGTTCCAGGTATAGAAGATCAAATTACTTCAGCTGATTCAAATGCAACACAAGATGTAAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTGCATATGAGACCAAGTCCCTTTCCCTACAACACTCTACCACTCGGACAAATGCTACCGCTCACTCCATAACAAATGAAATGACTCAGCGTTTACCACTCCCTTCATCAGAATATTGGCACACTGATCAACCACCACCACATTCCAGCATGTGTATCTCATTCTCAGATTTTGATAGTACCAATCGTTTTCAAGACTTTCAGCTCTTCACTGCACCCTATGAATCAGGTTTTCCTTGCAACCAAGTGGATTAA 1323 0.4263 MEWNAKSLGQWDWEHFFLNTKATDGEADGEINVGALYPSGGSACSGSELIHASSSRSSKSASNNSSSNGDSKISSILTLEGSQDDSSGKKELCKGEAIETSPAAEPSSVSGEPLLTLKLGKRFYFEDVCTASDSKKASSFEVPISSGKKCRANNQNLQHPICQVEGCGLNLSSAKDYHRKHRVCESHSKSPRVVISGLDRRFCQQCSRFHALSEFDDKKRSCRRRLSDHNARRRKPQPEAVQLNPSVLSSSPYAIDGRQIMSPFAFSRSATNLAWQDIHCSKLPQTKDFLPKPAKAFNKIPNIVAMLSDDSSGLLTSKDIATKSIVPGIEDQITSADSNATQDVNRALSLLSTNSWGAYETKSLSLQHSTTRTNATAHSITNEMTQRLPLPSSEYWHTDQPPPHSSMCISFSDFDSTNRFQDFQLFTAPYESGFPCNQVD* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2313 440 ProSiteProfiles Zinc finger SBP-type profile. 159 236 IPR004333 GO:0003677
Apr10g2313 440 SUPERFAMILY SBT domain 160 241 IPR036893 GO:0003677|GO:0005634
Apr10g2313 440 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 439 IPR044817 GO:0003677
Apr10g2313 440 Gene3D - 152 223 IPR036893 GO:0003677|GO:0005634
Apr10g2313 440 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 22 439 - -
Apr10g2313 440 Pfam SBP domain 162 235 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2313 Apr-Chr10 35128803 35132397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2313 1 401 SBP-box Gene Family AT5G43270 36.941 4.07e-62 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr10g2313 SBP 2.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2313 - - gmx:100781289 663.299