Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2301 ATGGTTATGGCGGAAGAAGAAGAGAAGGCGGTATCGAGCGAACCCGAATTCCCGAAGAGTCGGGTGAAGAAGATTATGACTCTGGACGAAGAGGTGAAGAGGGTGAGCTCAGAAGCGCTGTTCCTGGTGTCGCGCTCCACGGAATTATTCCTCCAATATCTTGCTGAAAATTCAGCGCAAGTTGCCATTGAGAAGAAACGCAAGACGGTGAAGCTTGAACACATAAGAATGGCCGTGAAGAGGCACCGACCAACTCGGGATTTTCTCCTCGATTCGCTTCCGTTGCCTTCTCAGCCCACTAAACCCGATGGGCCCACTCCGGCTGGGGATCGGCCCAAATCCAATACTGCTCCGCCTGGTACTCGTCGTATTGATCACTTCTTCCGAAAGCCAGAATCTGAAAACCAAACCCAAGCCCCAATAGATGCCCAAGCCCCAATAGATGAATCTTAG 453 0.5143 MVMAEEEEKAVSSEPEFPKSRVKKIMTLDEEVKRVSSEALFLVSRSTELFLQYLAENSAQVAIEKKRKTVKLEHIRMAVKRHRPTRDFLLDSLPLPSQPTKPDGPTPAGDRPKSNTAPPGTRRIDHFFRKPESENQTQAPIDAQAPIDES* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2301 150 MobiDBLite consensus disorder prediction 86 150 - -
Apr10g2301 150 Gene3D Histone, subunit A 1 94 IPR009072 GO:0046982
Apr10g2301 150 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 16 79 IPR003958 -
Apr10g2301 150 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 5 132 - -
Apr10g2301 150 SUPERFAMILY Histone-fold 14 81 IPR009072 GO:0046982
Apr10g2301 150 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 132 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2301 5 137 CCAAT-HAP5 Transcription Factor Family AT5G43250 55.970 3.78e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Apr10g2301 CBFD_NFYB_HMF 9.7e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2301 - - ccaj:109814845 211.46