Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2297 ATGGTCAAGTACTCCAGAGAACCCGACAATCCCACCAAGTCTTGCAAGGCTAGAGGTGCTGATCTCAGAGTGCATTTCAAGAACACCAGGGAGACTGCCTTTGCCATCAGGAAATTGCCCTTGGTGAAAGCTAAAAGATACTTGGAGGATGTTTTGGCCCATAAACAAGCCATTCCTTTCCGACGCTTCTGTGGTGGTGTTGGGAGGACAGCCCAGGCTAAGAATAGGCACTCTAATGGACAAGGACGTTGGCCTGTCAAATCTGCTAAATTCATCCTAGATTTGCTCAAGAATGCTGAGAGCAATGCTGAAGTAAAAGGTTTGGATGTGGATGCTCTCTACATTTCTCATATCCAGGTTAATCAAGCACAGAAGCAAAGACGTCGCACCTACCGTGCTCATGGAAGAATCAATCCCTACATGTCATCTCCCTGCCACATAGAGCTGATCCTATCTGAGAAGGAAGAGCCTGTCCAAAAAGAGCCTGAGACCCAGTTAGCAACAAGCAAGAAGAAGTCTCAAGCCCTTCGAAGCGGTGCTTCATCTTAA 549 0.4718 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVQKEPETQLATSKKKSQALRSGASS* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2297 182 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Apr10g2297 182 Gene3D Ribosomal protein L22/L17 1 181 IPR036394 GO:0003735|GO:0005840|GO:0006412
Apr10g2297 182 PANTHER 60S RIBOSOMAL PROTEIN L17 1 182 IPR005721 GO:0003735|GO:0006412|GO:0015934
Apr10g2297 182 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 182 - -
Apr10g2297 182 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Apr10g2297 182 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Apr10g2297 182 MobiDBLite consensus disorder prediction 156 182 - -
Apr10g2297 182 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Apr10g2297 182 MobiDBLite consensus disorder prediction 168 182 - -
Apr10g2297 182 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Apr10g2297 182 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2297 Apr-Chr10 35030565 35032502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2297 1 182 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.363 6.67e-117 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2297 K02880 - zju:107434003 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2297 10 35030565 35032502 Apr2g1686 2 22516555 22519533 PCT