Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2291 ATGGACATTACTGAGGTTGAAGAAAATCTTTTCGCGGTGGGCGATGCCAAGTTACATGGAGATATGTGCAAGCGTCTGTCTGCAATATACTGCAAAATATTGTCATTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGTAAATCTGGAATTCAGGCATTATGTTCATTGCACGTAGCCTTAGAAAAGGCAAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAAACAGGTGGAAGACATTGTTCCTCAATCTATTGGATGTCAGATTGACAAAATTGTGAATGAACTTGCAAGTACGGTATTTGCACTTGACTCATTAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGGGACAAAGTTGAACAATTCTAATGACAGTAATGAGCTTGAATGTTTTCATCTGGCTGCTACTAGACTTGGAATCACTTCTTCAAGAGCAGCCCTTACAGAACGAAGAGCTCTCAAAAAACTCATAGGAAGGGCCCGGGCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTCTTACACCTTATGAGGAAATATTCCAAACTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCACCCACTGTTCAGAGATCTCTTGAGGATGGCGTTCCTGGTGGTCAATGTCTTGCCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAATTTTAAGCCAAATAATAGGAAATCAGGACAGATGCTCCTTCCACCTGAAGAGTTAAGGTGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTATGTATAGAGAAATGGTTCAGTGATGGGCACAACACCTGCCCAAAGACTCAGCAGAAACTTCAACATTTTTTTTTGACTCCTAATTACAATGTTAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAATACCCATTCCTGAAGGCCCTCCCGAATCTCTTGATTTTAACTACTGGAGATTGGCATTATCAGAATCTGACTCCACAAATTCAAGATCCATAAACAGTGTCAACTCTTGCAAATTGAAGGGTGTCAAAGTTGTTCCTCTAGAAGAGAGTGCTATCTCAGAGCAAACAGGGGGAAATGCAACTGAATGTTTTTCTACACAAGAGGGAGATAATGAGCAGTATCTTAGTTTTCTAAAAGACTTGACAGATGGAGACAATTGGAAGAGGAAGTGTAAAGTGGTAGAACAGTTGAGGTTGTTGCTGCGGGATGGTGAGGAAGCCAGGATTTTTATGGGGGATAATGGATTTGTTGAAGCACTTGTGCAGTTTCTGCAATCAGCTGTTCATGAAGGGAATGTGATGGCTATAGAAAATGGAGCCATGGCTCTATTCAACTTAGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAATCTTAACGTTGTTGGCAGAAATGACTTCAAACACTAGTTCATATAGTTGTGCAACCGCCTTGTATCTGAATCTTTCTTGCCTTGAGGAAGCCAAGCATATGATTGGCACAAGCCAGGCTGCCCAGTTCCTAATCAAGATTCTTCAAGCCAAGGCAGAAGTCCAGTGCAAGCTAGATTCCCTCCATGCACTCTATAATCTTTCAGCTGTACCCTCCAATATTCCAAACCTCCTTTCATCTGGCATCATTAATTCCCTACAATCCCTTATTGTAGGCCAGGGTGATTCCACGTGGACGGAAAAATGCTTAGCCGTTTTGGTAAATTTGGCTGTTTCTCAAGTGGGAAGAGAAGAAATGATGTTGGCTCCTGGACTCATAAGCGCATTGGCGTCCGTACTTGATACCGGTGAGCCCTTAGAGCAGGAACAAGCTGCTGCTTGTCTCCTAATTTTGTGCAACAGGAATGAGAAGTGTTGTGAGATGGTCCTGCAAGAAGGGGTTATCCCTGCATTGGTGTCAATATCAGTGAATGGAACCTCAAGAGGAAGAGAAAAAGCTCAGAAACTCTTGATGCTCTTCCGAGAGCAGCGACAAAAAGAGCATTCAACTTCTAACTCACAAAATCAATGCTCGTCTGAAACTAGTGAATTGTCTGTGCCTCCTACTGAAACAAAACCACTATGTAAATCAATTTCTAGAAGAAAGGTGGGGAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTCCCAGTGTTAA 2298 0.4147 MDITEVEENLFAVGDAKLHGDMCKRLSAIYCKILSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLKQVEDIVPQSIGCQIDKIVNELASTVFALDSLEKQVGDDLIALLQQGTKLNNSNDSNELECFHLAATRLGITSSRAALTERRALKKLIGRARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGVPGGQCLAFDRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQKLQHFFLTPNYNVKGLVASWCEQNGIPIPEGPPESLDFNYWRLALSESDSTNSRSINSVNSCKLKGVKVVPLEESAISEQTGGNATECFSTQEGDNEQYLSFLKDLTDGDNWKRKCKVVEQLRLLLRDGEEARIFMGDNGFVEALVQFLQSAVHEGNVMAIENGAMALFNLAVNNNRNKEIMISAGILTLLAEMTSNTSSYSCATALYLNLSCLEEAKHMIGTSQAAQFLIKILQAKAEVQCKLDSLHALYNLSAVPSNIPNLLSSGIINSLQSLIVGQGDSTWTEKCLAVLVNLAVSQVGREEMMLAPGLISALASVLDTGEPLEQEQAAACLLILCNRNEKCCEMVLQEGVIPALVSISVNGTSRGREKAQKLLMLFREQRQKEHSTSNSQNQCSSETSELSVPPTETKPLCKSISRRKVGKAFSFLWKSKSYSVSQC* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2291 765 MobiDBLite consensus disorder prediction 709 736 - -
Apr10g2291 765 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Apr10g2291 765 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 756 - -
Apr10g2291 765 MobiDBLite consensus disorder prediction 713 732 - -
Apr10g2291 765 CDD RING-Ubox_PUB 283 325 IPR045210 -
Apr10g2291 765 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Apr10g2291 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Apr10g2291 765 SMART arm_5 539 580 IPR000225 GO:0005515
Apr10g2291 765 SMART arm_5 500 538 IPR000225 GO:0005515
Apr10g2291 765 SMART arm_5 623 664 IPR000225 GO:0005515
Apr10g2291 765 SMART arm_5 454 498 IPR000225 GO:0005515
Apr10g2291 765 SUPERFAMILY RING/U-box 276 354 - -
Apr10g2291 765 SUPERFAMILY ARM repeat 422 706 IPR016024 -
Apr10g2291 765 PANTHER U BOX DOMAIN-CONTAINING 1 756 - -
Apr10g2291 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
Apr10g2291 765 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Apr10g2291 765 Gene3D - 417 746 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2291 Apr-Chr10 35000182 35005137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2291 1 762 U-box Gene Family AT1G24330 65.077 0.0 1001
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2291 - - gmx:100804344 1314.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2291 10 35000182 35005137 Apr3g1472 3 29328799 29333383 PCT