Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2267 ATGCTTAAGAAGTGCAATTATGAAGTGACTACTTGTTGTTTAGCAAGACATGCTCTAAACTTGCTTCGTGAAAGGAAGGATGGATATGATATAGTGATCAGTGATGTAAACATGCCCGATATGGATGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTGGATGGAGAAACAAGCAGGGTTATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAATATATGGCAGCATGTCTTTAGAAAAAGGATACACGAGGCAAGAGAATTTGAAAGTTTTGAGAGTTTTGAGAGCATTCACTTGATGAGGAATGGATCGGAGCAATCAGATGATGGGAACCTGTTTGCTGTAGAAGATTTGACCTCGACAAAGAAAAGAAAAGATGCAGATAACAAACTTGATGACAAAGAATTTTTGGATCCATCTTCCACCAAGAAAGCCAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCTGTGAATCATATTGGCTTTGATAAAGTTGGTCCCAAGAAAATACTAGATTTGATGAATGTTCCATGGCTCACTAGAGAGAATGTTGCTAGCCACTTGCAGAAATACCGGCTTTATTTGAGTAGGATTCAGAAAGAAAACGATCAGAGATCTTCCTCAAGTGGAATGAAGCATTTGGATTTACCTTCAAAAGATCTGGGAAGTTTTGGCTTTCGGATTTCAGTAAGCAATCAACAAAATGATGTTTCAATTGACAGTTACAATTATTCAGATGGATCATTACAACTTCAGAACGTGGAAACTAAAACTCATGAAGGTGATCCCAAGGGAATTGTATCACAGTCCACCACGGCAGAAAAAGGAAGGCCTGTGACTGGTAACATTACTGATACAGAGGTAAGAGAGAGTTTAAGGATGTGCCGTAATCAACCTTTTGCCCCTCTAGAGTCTGAAGGAAATCATGCAGTGTTTGATTGCTCCTTGCCAACACAGTACTCTTGGACTGAAGTTCCACATATGCAACTCAAAGAAGAACACAAGTCCCTTGTTCATTTAGACGATAGCTTCAATCCTTTGCCATTACATGGTAAGAAGCATCACATTCAAGTTGATCAATCACAATCAATTGCTTCAATTAGCTCCACTCCCTCAGTAACGGATGAAGAGGTTGCTGCTTGTGTAGAAACAAAACCTTTGTTTGCAGATTACAAGAATGATTATGCCAGTTCTGTGAGTTCTATAGGGAATGCAGTTGACACCTTTCCTATTCAACCAGGAAGCCTTACAATGAATGATCAATCCTCAGAACCCATTCCCACTATAAATTCAGGCTTGAAAACACAGGGATACAATCTTAGTTGCAATTCTGATCTGGAATTTTACCAAAGAAACCTACTTTTGGGAGGTGATGCAACTTCTGCACCTTTGGATGAGGACTTGCATTTCTATTGGCTACAAGGTGAATGCTATAACATGAACTTTGGTCTGCAGAATATAGGGATGTCTGAGTATTATGATCCAGGACTTATTACAGAAGTTCCAACCCACTTTTATGATTCAGCTGATTATTCACTAATAGATCAAGGTCTATTCATAGCATGA 1641 0.3906 MLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESFESFESIHLMRNGSEQSDDGNLFAVEDLTSTKKRKDADNKLDDKEFLDPSSTKKARVVWSVDLHQKFVKAVNHIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRIQKENDQRSSSSGMKHLDLPSKDLGSFGFRISVSNQQNDVSIDSYNYSDGSLQLQNVETKTHEGDPKGIVSQSTTAEKGRPVTGNITDTEVRESLRMCRNQPFAPLESEGNHAVFDCSLPTQYSWTEVPHMQLKEEHKSLVHLDDSFNPLPLHGKKHHIQVDQSQSIASISSTPSVTDEEVAACVETKPLFADYKNDYASSVSSIGNAVDTFPIQPGSLTMNDQSSEPIPTINSGLKTQGYNLSCNSDLEFYQRNLLLGGDATSAPLDEDLHFYWLQGECYNMNFGLQNIGMSEYYDPGLITEVPTHFYDSADYSLIDQGLFIA* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2267 546 Gene3D - 1 162 - -
Apr10g2267 546 Gene3D - 163 224 - -
Apr10g2267 546 CDD REC_typeB_ARR-like 1 99 - -
Apr10g2267 546 MobiDBLite consensus disorder prediction 288 306 - -
Apr10g2267 546 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 165 218 IPR006447 GO:0003677
Apr10g2267 546 SUPERFAMILY CheY-like 1 114 IPR011006 -
Apr10g2267 546 MobiDBLite consensus disorder prediction 281 306 - -
Apr10g2267 546 Pfam Myb-like DNA-binding domain 167 217 IPR001005 -
Apr10g2267 546 SMART REC_2 1 95 IPR001789 GO:0000160
Apr10g2267 546 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 521 IPR045279 GO:0009736
Apr10g2267 546 SUPERFAMILY Homeodomain-like 163 222 IPR009057 -
Apr10g2267 546 Pfam Response regulator receiver domain 2 94 IPR001789 GO:0000160
Apr10g2267 546 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 521 - -
Apr10g2267 546 ProSiteProfiles Response regulatory domain profile. 1 99 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2267 Apr-Chr10 34865002 34869113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2267 58 546 Response Regulator Gene Family AT1G67710 38.281 1.63e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Apr10g2267 Response_reg 1.4e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2267 - K14491 gmx:100797421 939.488