Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2266 ATGTGGCAAAAGCAGCACAATACTTCTTCTTACAGTGATTCTGTCAAGGCTCTTGAAGATGATATTCAACATGCTAATATCCTGGCATCAGCACTTCCTCAAGATTATGGTGGGGACTATTTTCAGATGAAATTATCTTACAGCCCCTTTGCTCCTCTTTTCTTGTTCTTGATTGAATGGTTGGATTTTAGTTGTACAGATACTTTGCCTATGTATTTGGGCTTACTCCACATACTTGTTTTCAATGTATATGCTGATGGAATGCCATCTATTTCCTCAAAAGAAAGGAAAGCAACTATAAAGGAATTCTATGCTGTTATATACCCTTCATTAAGGTTACTTCAAGGTGAATTTAATAATAATGATCAAAGAAGCAGCTATGCAGAAGTTGTGAGAGGAAATAGGCTTGAAAAGCTTCTCAATAAAGATCTAGAAGGAGACGAGGAATGTGGCATATGCATGGAAAATAGCATGAAGATGGTTCTACCTAATTGTGGACATTCTCTGTGCATTAGCTGCTTCCATGATTGGTATGTGAGATCAGAATCATGCCCATTTTGCCGTGGAAGCCTCAGAAGGATCACTCCAAGAGATTTATGGGTGGTTATTGGCAACAAAGATGTAGTTGACAAGGTTACCATTGCCAAGGAGAATTTAAGACGTTTGTACCTTTACATTGAAACACTGCCTCCAATCATACCGGATGCACATGTATATACATTTAATTATATGATATAA 738 0.3753 MWQKQHNTSSYSDSVKALEDDIQHANILASALPQDYGGDYFQMKLSYSPFAPLFLFLIEWLDFSCTDTLPMYLGLLHILVFNVYADGMPSISSKERKATIKEFYAVIYPSLRLLQGEFNNNDQRSSYAEVVRGNRLEKLLNKDLEGDEECGICMENSMKMVLPNCGHSLCISCFHDWYVRSESCPFCRGSLRRITPRDLWVVIGNKDVVDKVTIAKENLRRLYLYIETLPPIIPDAHVYTFNYMI* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2266 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 197 IPR013083 -
Apr10g2266 245 Pfam Zinc finger, C3HC4 type (RING finger) 147 192 - -
Apr10g2266 245 SUPERFAMILY RING/U-box 138 194 - -
Apr10g2266 245 ProSiteProfiles Zinc finger RING-type profile. 150 188 IPR001841 -
Apr10g2266 245 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 4 245 - -
Apr10g2266 245 SMART ring_2 150 187 IPR001841 -
Apr10g2266 245 PANTHER RING FINGER PROTEIN 41, 151 4 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2266 Apr-Chr10 34858523 34860650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2266 112 227 C3H Transcription Factor Family AT2G20030 29.457 8.65e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2266 - - gmx:100805014 436.802