Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2261 ATGGAGTGGCTAGATTTCTTCCTAGTGACAACAAATACCTTAGGCTTGATTTGTCTATGCAAGGCTCTTATCAAATTTCTCAAGTGGGTATGGGTGATGTTCTTGAGGCCACCAAAGCAACTCAAAGAATATGGTTCATGGGCTATAATCACTGGTTCCACTGATGGAATTGGCAAGGCCTTGGCCTTTGAGTTGGCATCTAAGGGACTTAACCTTCTCTTGGTTGGTAGAAACTCCCTAAAACTTGAGGCAACACTGAGGGAAATAAGAGAAAGACATGGTGGGCATGTTGAGGTCAAGTTTGTGATCATAGATATGCAAAAAATTGATGGAGAGGAAATGGCAAAAACAATAGAGAAAGCAATAGATGGTTTAGATATCGGTTTGCTAGTTAATAATGCTGGCTTGGCTTACCCTTATGCTAGATTCTTTCATGAGGTTGATGAAGAGCTTATGGATGCTATCATAAAAGTGAATGTGGAGGGAACAACTTGGATCACAAAAGCAGTGCTTCCCACCATGATCAAGAAGAAAAAGGGAGCAATTGTAAACATTGGTTCTGGTTCCACTATTGTGCTTCCTTCATATCCTCTAGTCACCCTCTATGCTGCTTCAAAAGCATATCTTGCAATGTTCTCCAGATGCATCAGTTTGGAATACAAGCATCAAGGAATTGACATCCAATGTCAGGTTCCATTATTTGTGTCAACAAAGATGACAAAAATGAATGCATCTCTTTTTGTACCAACACCAGATATGTATAGCGAAACATGCACAAGATGGATTGGCTATGAAAAATTGGCTGTACCCTACTTTCTTCACTCTGTGCAAGCCTTTCTCATAAGAAAAATTCCTGATGCAATTGTGGATTCCTATATGCTGCGTTATTTTCTTTATTGGCGTAAAAGAGGACAACTCAAGGACTCCAAGTTGAAAGCATTAGCAGCATCTAATTCCCAAGCAGCAAAGATGGTGCATGAAGATCATACAAATTAA 996 0.3976 MEWLDFFLVTTNTLGLICLCKALIKFLKWVWVMFLRPPKQLKEYGSWAIITGSTDGIGKALAFELASKGLNLLLVGRNSLKLEATLREIRERHGGHVEVKFVIIDMQKIDGEEMAKTIEKAIDGLDIGLLVNNAGLAYPYARFFHEVDEELMDAIIKVNVEGTTWITKAVLPTMIKKKKGAIVNIGSGSTIVLPSYPLVTLYAASKAYLAMFSRCISLEYKHQGIDIQCQVPLFVSTKMTKMNASLFVPTPDMYSETCTRWIGYEKLAVPYFLHSVQAFLIRKIPDAIVDSYMLRYFLYWRKRGQLKDSKLKALAASNSQAAKMVHEDHTN* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2261 331 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Apr10g2261 331 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Apr10g2261 331 PRINTS Glucose/ribitol dehydrogenase family signature 174 190 IPR002347 -
Apr10g2261 331 PRINTS Glucose/ribitol dehydrogenase family signature 202 221 IPR002347 -
Apr10g2261 331 PRINTS Glucose/ribitol dehydrogenase family signature 223 240 IPR002347 -
Apr10g2261 331 Pfam short chain dehydrogenase 47 242 IPR002347 -
Apr10g2261 331 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 189 217 IPR020904 GO:0016491
Apr10g2261 331 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 3 310 - -
Apr10g2261 331 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 307 IPR036291 -
Apr10g2261 331 CDD 17beta-HSD1_like_SDR_c 45 285 - -
Apr10g2261 331 PIRSF 11-beta-HSD1 3 307 - -
Apr10g2261 331 PANTHER RH59310P 3 310 - -
Apr10g2261 331 Gene3D - 41 268 - -
Apr10g2261 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Apr10g2261 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 188 IPR002347 -
Apr10g2261 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 221 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2261 Apr-Chr10 34822463 34824834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2261 14 309 Lipid Metabolism Gene Families AT1G67730 48.822 2.22e-107 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2261 K10251 - gmx:100816067 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2295 3 38559016 38562504 Apr10g2261 10 34822463 34824834 PCT