Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2255 ATGGAAATTCCACTCTCATTTGTGTTACTCTTTCTACTTCTTGTACCTTCCTTCATTTGTTCTTCACCAATTCAAGACCCTGAATTTGTAGTGGAAGAAGTACAAAAGAGCATTAATGCGTCAAGGAGAAACTTAGCATTTCTTTCTTGTGGGACAGGCAATCCCATTGATGATTGTTGGAGGTGTGATCCCAACTGGGAAAAGAACAGAAAGCGTTTAGCAGATTGTGCCATTGGGTTTGGTAAGCAGGCCATTGGAGGAAGGGATGGTAAAATATATGTGGTGAGTGATTCAGGTGATCACCCTGTGAATCCCAAGCCAGGAACTCTAAGATATGGTGTTATCCAAGAGGAGCCATTGTGGATCATCTTCAAGCGTGACATGGTGATCAAGTTGAAGCAAGAGTTGATGATGAATTCTTTCAAAACAATTGATGGTAGAGGTGCAAATGTGCACATTGCCGGAGGGCCTTGCATTACTATACAATATGTGACCAACATTATCATTCATGGGATTAACATCCATGATTGCAAACAAGGAGGGAATGCATATGTGCGGGACTCTCCTACCCATTATGGTTGGAGAACTCTATCTGATGGTGATGGGGTGTCAATCTTTGGTGGGAGCCATATTTGGGTGGATCATTGCTCTCTCTCCAATTGCCGTGATGGACTAATTGATGCCATTCATGGATCCACTGCCATCACTATCTCCAACAATTACTTGACTCACCATAACAAGGTCATGCTTTTGGGCCACAGTGATACTTTCATCCAAGATAAGAACATGCAAGTCACCATTGCCTTTAACCATTTTGGAGAAGGGCTAGTGCAGAGAATGCCAAGATGCAGGCATGGATACTTCCATGTTGTGAACAATGACTACACTCATTGGAAAATGTACGCCATTGGGGGCAGTGCTGCTCCAACTATCAATAGCCAAGGCAACAGATTTCTTGCTCCCAATGACATGACCTTCAAAGAGGTCACAAAGCGTGAGGTTACCCCAAAGAGCCAATGGAAGAATTGGAATTGGAGGTCTTCAGGAGATTTGATGTTAAACGGTGCCTTCTTTACACCATCAGGAACAGGTGCATCTTCAAGCTATGCCAGAGCATCCAGTTTGGCAGCAAAACCATCTTCACTTGTCAGTTCCATCACAGCATCAGCTGGATCACTTAACTGCAGAAAGGGCTCACGCTGCTGA 1206 0.4395 MEIPLSFVLLFLLLVPSFICSSPIQDPEFVVEEVQKSINASRRNLAFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKQAIGGRDGKIYVVSDSGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGANVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDGVSIFGGSHIWVDHCSLSNCRDGLIDAIHGSTAITISNNYLTHHNKVMLLGHSDTFIQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWKMYAIGGSAAPTINSQGNRFLAPNDMTFKEVTKREVTPKSQWKNWNWRSSGDLMLNGAFFTPSGTGASSSYARASSLAAKPSSLVSSITASAGSLNCRKGSRC* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2255 401 Pfam Pectate lyase 133 318 IPR002022 -
Apr10g2255 401 SUPERFAMILY Pectin lyase-like 35 395 IPR011050 -
Apr10g2255 401 SMART amb_all 127 324 IPR002022 -
Apr10g2255 401 Gene3D - 53 394 IPR012334 -
Apr10g2255 401 PANTHER PECTATE LYASE 18-RELATED 1 398 IPR045032 GO:0030570
Apr10g2255 401 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Apr10g2255 401 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Apr10g2255 401 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Apr10g2255 401 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Apr10g2255 401 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Apr10g2255 401 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Apr10g2255 401 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Apr10g2255 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Apr10g2255 401 PANTHER PECTATE LYASE 1 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2255 Apr-Chr10 34784558 34786395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2255 5 401 Polysaccharide Lyase AT5G63180 77.723 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2255 K01728 - gmx:100782388 766.148