Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2254 ATGGCATTTTCATTCACATTTATGTTCCAGTTCTTGCTTCTTGTCCCAACTTTGATCTATGCTTCTTCAGTTCAATATCCTGAATTAGTGGTCCAAGAAGTACAAAAGAGCATTAATGTGTCAAGGAGAAACTTGGGATTTCTTTCTTGTGGAACGGGCAACCCCATTGATGATTGTTGGAGGTGTGACCCCAACTGGGAAAAGAACCGCAAGCTTCTAGCCAATTGTGCTATTGGGTTTGGAAGACATGCCATTGGTGGGAGGGATGGCAAAATATATGTGGTCACTGACCCTAGTGATAACCCTTTGAACCCAATGCCAGGCACTTTAAGATATGCAGTTATTCAACTAGTACCTTTGTGGATCATATTCAAGCATGACATGGGGATCAAACTAGAGATGGATCTCCTCGTGAATTCTTACAAAACCATTGATGGAAGAGGAGCAAACGTGCACCTTGCTGGAGGGCCTTGCATCAAAGTGCAGCACAAGTCCAACATCATAATTCATGGCATACACATCCATGACTGCAAACGGGGTGGCAATGGATATGTGAAGGACTCTCCTAACCATCGTAGCTGGAGAAGAAGATCAGATGGTGATGGGGTGACAATCTTTGGCGGGAGCCATGTTTGGGTGGACCATTGCTCCTTGTCAAGTTGTTTTGATGGCCTAATTGATGTTGTTCATGGGTCAACGGCTATCACCATTTCTAACAATTACATGACGCACCATAACAAAGTCATGCTCTTGGGCCACAGTGATTCCTACGAAGAGGACAAGCATATGCAAGTTACTGTAGCCTTCAACCATTTTGGAGAAGGGCTTGGGGGAAGAATGCCGAGATGCAGGTTCGGATTCTTCCATGTGGTGAACAATGATTACACACATTGGCATAATTACGCAATAGGTGGGAGTTCATCCCCAACTATTTTCAGCCAAGGCAACAGATTTCTTGCCCCGGATGATGAAGACCACAAAGAGGTCACCAAACACTTCACTTCATCAGAGAGCGAGTGGAGGAAATGGAATTGGAGGTCTGAAGGAGATCTAATGTTGAATGGAGCCTTCTTCACACCGTCTGGAGCTGGAGCAGCTGCTAGGTATAATAAAGCGTCAAGCATGGCAGCACGACCACCTATGCTTGTGCCTTCAATGACAGCAGGGGCTGGAGCACTTAGATGCAAAAGGGGCTACCCATGCTACTAG 1209 0.4566 MAFSFTFMFQFLLLVPTLIYASSVQYPELVVQEVQKSINVSRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKLLANCAIGFGRHAIGGRDGKIYVVTDPSDNPLNPMPGTLRYAVIQLVPLWIIFKHDMGIKLEMDLLVNSYKTIDGRGANVHLAGGPCIKVQHKSNIIIHGIHIHDCKRGGNGYVKDSPNHRSWRRRSDGDGVTIFGGSHVWVDHCSLSSCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSYEEDKHMQVTVAFNHFGEGLGGRMPRCRFGFFHVVNNDYTHWHNYAIGGSSSPTIFSQGNRFLAPDDEDHKEVTKHFTSSESEWRKWNWRSEGDLMLNGAFFTPSGAGAAARYNKASSMAARPPMLVPSMTAGAGALRCKRGYPCY* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2254 402 Gene3D - 53 394 IPR012334 -
Apr10g2254 402 PANTHER PECTATE LYASE 3 398 - -
Apr10g2254 402 SUPERFAMILY Pectin lyase-like 38 395 IPR011050 -
Apr10g2254 402 Pfam Pectate lyase 137 318 IPR002022 -
Apr10g2254 402 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Apr10g2254 402 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Apr10g2254 402 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Apr10g2254 402 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Apr10g2254 402 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Apr10g2254 402 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Apr10g2254 402 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Apr10g2254 402 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Apr10g2254 402 PANTHER PECTATE LYASE 18-RELATED 3 398 IPR045032 GO:0030570
Apr10g2254 402 SMART amb_all 127 324 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2254 Apr-Chr10 34778513 34780884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2254 3 401 Polysaccharide Lyase AT5G63180 69.802 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2254 K01728 - gmx:100801136 738.028