Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2249 ATGGGTGAAACAGGTATCATTCTCCGTTTCCCCTTAGACCCAACAGCGCAAGAGTTCACACCAACAAACCTATGTTACCCCTATCACTATCCCTATGCTCCCCCACCCATTCCTCTTCCTCTTCCTCTACCCCTTCCCTACCCTCCTCCGTTCCCTCCACCGCACCTTTCCACGGCACCAACTCGCTCCCTTCTACTCACTCCTCTCCCCGTCATCACCGAGTTAGCACTCAAAACCCAACTCCAACACTTCGGCGACGTAAGAGCCCTCCAAATGGATTCTCTCCGTCACGGTTTCGTCACCGTTCACTTCTACGACCTCCGCCATGCAGAAACTGCCTTCGCCGCTATCCGCATGCACCACTCCCCTCAATTCCACCCCGCACCGCCGCCCCATGGACTCGTCGCCGGCCGCCCCGTCTGGGCCCACTATGTCCTCTCCGACGCTCAGAACCAAGGCACCCTCGTCGTTTTCAACTTGGACCCCGACGTCTCCGCCGAGAATCTCCGGCGAGTTTTCGAGCCCTTCGGTCCCATAAAGGAATTGAGAGACACCCCATGGAAAAGGAATCAAAGATTCGTGGAGTTCTTCGACACAAGAGATGCTTCCAAGGCTTTGAAACATATGAATGGAAAGGAAATTCATGGCAAAACCGTTGTCATTGAGTTCAGTAGACCAGGTGGTCACACTAGAAAGTTCTTCCATTCTTCTTCTCCACCTTCTAATAAAAAGCCTTTCAATTTCAATATTAATATTCCACCTCTTCAATCTCCTTCCCCACGACGTCGTTTTGCTTCCTCTCGCTTCCACTCCTCTCACCCACAACTCTCTCACAAGAAAACCCCCCACAAGGTTCCCAATCATGCCACCATTGATACCACAGTTGGTAGCACTAAGCAGCAGCAGCAACAACAACAACAACAACTACCTAGGAGTAGTAGGCATTGGAAAGGAAAACAAGCAAAGAAACACGAAACGCGGTTTCTTATCAAAGAGGATGCCATTGTAGAGTCTAGTTCAAGAGATACTAGAACTACTGTGATGATCAAGAACATTCCCAATAAGTACAGTCAGAAGCTACTATTAAACATGCTGGACAACCACTGTATACACTGCAACGAGCAGATAGGAGACGGCGATGAGCAGCCTCTATCCTCCTACGACTTCGTGTACCTTCCCATTGATTTCAACAACAAGTGCAACGTGGGATATGGGTTTGTTAACATGACATCTCCGGAGGCAACTCTGAGGCTGTACAAGGCCTTCCATCTTCAACACTGGGAGGTTTTCAATTCCAGAAAAATTTGTGAAGTCACCTACGCTAGAGTTCAGGGATTGGAAGCGTTGAAAGAGCATTTTAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACCTGCCAGTGGTGTTTGAACCGCCTCGAGATGGGAGGGAACTGACGGAGCCACTTCCATTGGTGGGGAACAAGCAACCACTCATTCCAATTCCGATTGATGAGATGGAGAATGGTGTTTCTGCTTCTGCTTCTGCTTCTGCTTCTGACTATGACGTGCTTAGCAGCAAAAGCGGCGGCGTGGGTGATGATGACACAATTCAAGTGTAG 1602 0.4944 MGETGIILRFPLDPTAQEFTPTNLCYPYHYPYAPPPIPLPLPLPLPYPPPFPPPHLSTAPTRSLLLTPLPVITELALKTQLQHFGDVRALQMDSLRHGFVTVHFYDLRHAETAFAAIRMHHSPQFHPAPPPHGLVAGRPVWAHYVLSDAQNQGTLVVFNLDPDVSAENLRRVFEPFGPIKELRDTPWKRNQRFVEFFDTRDASKALKHMNGKEIHGKTVVIEFSRPGGHTRKFFHSSSPPSNKKPFNFNINIPPLQSPSPRRRFASSRFHSSHPQLSHKKTPHKVPNHATIDTTVGSTKQQQQQQQQQLPRSSRHWKGKQAKKHETRFLIKEDAIVESSSRDTRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDGDEQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFEPPRDGRELTEPLPLVGNKQPLIPIPIDEMENGVSASASASASDYDVLSSKSGGVGDDDTIQV* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2249 533 MobiDBLite consensus disorder prediction 230 323 - -
Apr10g2249 533 MobiDBLite consensus disorder prediction 287 314 - -
Apr10g2249 533 SUPERFAMILY RNA-binding domain, RBD 154 423 IPR035979 GO:0003676
Apr10g2249 533 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 226 IPR000504 GO:0003723
Apr10g2249 533 Gene3D - 146 233 IPR012677 -
Apr10g2249 533 MobiDBLite consensus disorder prediction 508 533 - -
Apr10g2249 533 PANTHER RNA BINDING PROTEIN 18 499 - -
Apr10g2249 533 Gene3D - 290 449 IPR012677 -
Apr10g2249 533 SUPERFAMILY RNA-binding domain, RBD 49 117 IPR035979 GO:0003676
Apr10g2249 533 MobiDBLite consensus disorder prediction 234 272 - -
Apr10g2249 533 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 219 IPR000504 GO:0003723
Apr10g2249 533 PANTHER TERMINAL EAR1-LIKE 1 18 499 - -
Apr10g2249 533 CDD RRM3_EAR1_like 344 445 IPR034458 -
Apr10g2249 533 SMART rrm1_1 154 222 IPR000504 GO:0003723
Apr10g2249 533 Pfam RNA recognition motif 2 344 454 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2249 Apr-Chr10 34745003 34747395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2249 155 225 Eukaryotic Initiation Factors Gene Family AT2G23350 37.333 1.72e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2249 - - aprc:113851312 982.63