Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2248 ATGAGAAACAAAGGTGGATTTTTTCGTTATGCAGATGGCATTGACAAGTTGCTATTGTTTTTTGGGATTTTGGGTTGCGTTGGGGGTGGCCTACAAACTCCTATCACAATGCTTGTTCTTGGAAGTTTGATAGATGATTATGAAGGTGGATCTGAAAATTCCGTGTCTAACCATATTGTAGACAAGTACGCTCTAAGGCTGCTGGGTGTTGCTATTGGGGTTGCTTTATCTTCTTTTATTGAGAATGCACGAAACCTTGCAGAAGGGGTATGTTGGACAAGAACTGCTGAAAGACAAACTTCACGCATGAGAACTGAATATCTTAAATCAGTTCTAAGGCAAGAAGTTGGTTTCTTTGACAAGCAAACTGACTCTTCCACAACCTTCCAAGTTATTGCCACCATAACTTCTGATGCTCAAACAATCCAAGACACAATGGCTGATAAGTTGCCCAATTGTTTGGTTCACCTCTCAGCATTTTTCTCTAGCTTTATAGTGGCACTCTTCCTCTCTTGGAGACTTGCAGTAGCTGCTTTTCCTTTTTCAATCATCATGATCATGCCAGCAATCATATTTGGGAAGGATATGAAAGAGCTGGGAAAGAAAATGAAGGATGCATATGGAGTTGCTGGCAGCATAGCAGAACAAGCAATCTCATCTATTCGCATTGTTTATTCATATGTAGGTGAGAAGCAAACACTAAGAGAGTTCAGCTCTGCTCTTGAAAAAACCATGCAGCTTGGCATAAAGCAAGGTCAAACAAAGGGAGTGCTTATTGGGAGCTTTGGGTTACTATATGCTACTTGGGCATTCCAATCATGGGTTGGGAGTGTTCTGGTCAGGACAAAAGGAGAAAGTGGTGGTCCTGTGTTTTGTGCTGAAATATGTATCATTTGGGGTGGACTGTCTCTGATGAGTGCACTACCAAATTTCGGCTTCATCTTAGAGGCAACGATAGCTGCTACTCGGATTTTTGAGATGATTGACCGAGTGCCAACCATAAGTTCTCACAAAGAAAAAGGAAAGATCTTAACCCATGCCAGAGGAGAGATCACGTTTAAAGAAGTTGACTTTAGTTACCCATCAAGACCAGATGCACTGATTCTCCAAGGACTCAATTTGAAAGTGCAGGCGGGTAAAAAAGTAGGCCTAGTTGGAGGGAGTGGTTCTGGGAAATCTACTATGATCTCTTTGCTTGAAAGATTTTATGATCCTTTATATGGTGAGATATTGCTTGATGGATATGATATACAGACACTCCACCTTAAGTGGTTAAGGTCCCAGATGGGACTGGTAAATCAAGAGCCAATTCTCTTTGCAACATCCATAAGGGAGAACATTCAATTTGGAAAGGAAGGAGCTTCAATGGAAGCTGTTATAAATGCAGCAAAGGCAGCAAATGCACATGATTTCATTGTTAAACTTCCTAATGGATATGAAACTCAAGTAGGACAGCTTGGAACTCAGTTGTCAGGAGGGCAAAAGCAAAGGATTGCCATTGCAAGGGCTTTAGTACGAGAACCTAAAATTCTACTACTTGATGAAGCCACAAGTGCTTTGGATTCACAATCTGAAAGAATGGTGCAAGATGCACTTGATAAGGCTTCTAGAGGTAGAACAACAATCATCGTAGCACATCGCCTATCCACAATTCGTAAGGCTGATTCAATAGTAGTTCTTCAATCAGGAAGAGTGGTTGAGTGTGGTTCCCATGATGAATTACTCCAACTGAACAATGGACAAGGAGGGATTTACAGCAAAATGCTACAACTGCAACAAGCAACAAGTCAAAATGAAAATGCGTTGCATCAGATAAATAGGAGCCCCTTATCTATGGTAAATCTAACAAGTCCAAATTCAAGCTGGCAAAGAAGCCCAACTCATCAAGCATTTAGCTTAGCACAGCCTTTTAGCCCCATATATTCAATCAGTGTTATAGGGTCTAGCTATGATGACTACAACAATGAAAACTTAGAGAAATCTTCCCATGAAAACTTCCCCCAATGGCGTTTACTAAGAATGAATGCCCCTGAGTGGAAGCATGCTTTGCTTGGGTGTTTAGGGGCCATTGGCTCAGGAATATGTCAGCCAATTTATTCCTATTGCTTGGGAATAGTTGCATCCGTTTACTTTATAAAAGATAACTCTCTTATCAAATCAAAAATCAGGTTATACTCAGCCATCTTTTGCTGCATAGCCATTGTCAACTTCATTTCAGGCCTCCTTCAACATTACAATTTTACCATCATGGGAGAGCGCTTGCTAAAAAGGGTGAGAGAAGTTTTGCTAAAGAAGGTGCTGACCTTTGAGATAGGATGGTTTGACCAAGAAGAGAACAGCAGTGCAGCAATTTGCGCACGTTTGGCAACTGAAGCTAACTTGGTTCGATCCCTTGTAGCAGAAAGAATGTCATTGGTAGTTCAGGTTTTTGTAATGGCTTTCTTGGCTTTTGTACTTAGTTTGATTGTCACATGGAGGGTGGCCAGTGTCATGATCGCAATGCAGCCTTTGATCATTGCATGTTTCTATTCAAAAAGCATTCTCATGAAAAGTATGGCAGCCAAAGCGCGGAAGGCTCAAAGAGAGGGTAGTCAATTAGCAATGGAAGCCACAGTCAACCACAGGACTATTGCTGCATTCTCATCTGAGAAAAAGATACTCAATTTGTTCAAAACTGCTATGGAAGGCCCCAAGAAGGAAAGCATCAGGCAATCATGGATTTCAGGTTCCACATTGTCAGCGTCATATTTTGTAACAACAGCATCTATAACTTTGACCTTTTGGTATGGAGGCCGATTGCTTAATCAAGGGTTACTAGAATCAAAACATCTTTTGCAAGTTTTCCTCATTTTGATGGGCACTGGTAGACAAATTGCTGAGACAGGAAGCACAACTTCTGACATAGCTAAAAGTGGAAGGGCCATTAGTTCAATATTTGCAATACTAGATAGGAAAAGTCAGATTGAACCTGAAGATCCTAGACTTAGAAAGTTCAAAAGCACCAGGAAGGGACATATAAAACTGAAAGATGTCTTTTTCTCATACCCAGCAAGGCCAGATCAAATGATTCTCAAGGGCCTCAATCTTGACATTGAAGCTGGCAAAACAGTTGCATTAGTGGGACAAAGTGGGTCAGGAAAATCCACCATCATTGGCTTAATTGAAAGATTTTATGACCCCATGAAGGGTTCCATATCCATAGACAACTGTGACATTAGAGAATTTAACTTAAGAAGTTTAAGATCATATATTGCCCTGGTGAGTCAAGAGCCCACCCTCTTTGCAGGAACTATACGTGACAACATTGTGTATGGGAAGAAGGATGCATCAGAAGATGAAATAAGAATGGCTGCAGGTCTTGCCAATGCGCATGAATTTGTAAGTTCAATGAAAGATGGGTATGATACTTATTGTGGAGAAAGAGGAGTGCAGCTTTCAGGAGGGCAGAAGCAAAGGATAGCAATTGCTAGAGCAATACTTTTGAACCCATTAATCCTTCTCTTAGATGAAGCAACAAGTGCTCTGGATAGTGTGTCAGAAAATCTAGTGCAGAAGGCATTGGATAAAATGGTGGTTGGAAGAACATGTGTAATTATAGCTCATCGTTTGTCAACAATACAAAATGTTGACTCCATAGCTGTGATTGAAAATGGGAAGGTGGTGGAACAAGGATCACACTCAGAGTTATTGAGCTTTGGATCAAATGGGGCTTATTACTCCTTGATTAGGCTACAACGTGGCCACTCAAGTTGGGGTGATATGTACAAATAA 3771 0.4094 MRNKGGFFRYADGIDKLLLFFGILGCVGGGLQTPITMLVLGSLIDDYEGGSENSVSNHIVDKYALRLLGVAIGVALSSFIENARNLAEGVCWTRTAERQTSRMRTEYLKSVLRQEVGFFDKQTDSSTTFQVIATITSDAQTIQDTMADKLPNCLVHLSAFFSSFIVALFLSWRLAVAAFPFSIIMIMPAIIFGKDMKELGKKMKDAYGVAGSIAEQAISSIRIVYSYVGEKQTLREFSSALEKTMQLGIKQGQTKGVLIGSFGLLYATWAFQSWVGSVLVRTKGESGGPVFCAEICIIWGGLSLMSALPNFGFILEATIAATRIFEMIDRVPTISSHKEKGKILTHARGEITFKEVDFSYPSRPDALILQGLNLKVQAGKKVGLVGGSGSGKSTMISLLERFYDPLYGEILLDGYDIQTLHLKWLRSQMGLVNQEPILFATSIRENIQFGKEGASMEAVINAAKAANAHDFIVKLPNGYETQVGQLGTQLSGGQKQRIAIARALVREPKILLLDEATSALDSQSERMVQDALDKASRGRTTIIVAHRLSTIRKADSIVVLQSGRVVECGSHDELLQLNNGQGGIYSKMLQLQQATSQNENALHQINRSPLSMVNLTSPNSSWQRSPTHQAFSLAQPFSPIYSISVIGSSYDDYNNENLEKSSHENFPQWRLLRMNAPEWKHALLGCLGAIGSGICQPIYSYCLGIVASVYFIKDNSLIKSKIRLYSAIFCCIAIVNFISGLLQHYNFTIMGERLLKRVREVLLKKVLTFEIGWFDQEENSSAAICARLATEANLVRSLVAERMSLVVQVFVMAFLAFVLSLIVTWRVASVMIAMQPLIIACFYSKSILMKSMAAKARKAQREGSQLAMEATVNHRTIAAFSSEKKILNLFKTAMEGPKKESIRQSWISGSTLSASYFVTTASITLTFWYGGRLLNQGLLESKHLLQVFLILMGTGRQIAETGSTTSDIAKSGRAISSIFAILDRKSQIEPEDPRLRKFKSTRKGHIKLKDVFFSYPARPDQMILKGLNLDIEAGKTVALVGQSGSGKSTIIGLIERFYDPMKGSISIDNCDIREFNLRSLRSYIALVSQEPTLFAGTIRDNIVYGKKDASEDEIRMAAGLANAHEFVSSMKDGYDTYCGERGVQLSGGQKQRIAIARAILLNPLILLLDEATSALDSVSENLVQKALDKMVVGRTCVIIAHRLSTIQNVDSIAVIENGKVVEQGSHSELLSFGSNGAYYSLIRLQRGHSSWGDMYK* 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2248 1256 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 324 - -
Apr10g2248 1256 CDD ABC_MTABC3_MDL1_MDL2 1006 1245 - -
Apr10g2248 1256 PANTHER OS04G0481700 PROTEIN 11 1247 - -
Apr10g2248 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 683 970 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr10g2248 1256 CDD ABC_6TM_Pgp_ABCB1_D2_like 672 988 - -
Apr10g2248 1256 Pfam ABC transporter transmembrane region 19 282 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr10g2248 1256 Pfam ABC transporter transmembrane region 684 950 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr10g2248 1256 Gene3D - 993 1250 IPR027417 -
Apr10g2248 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1001 1245 IPR027417 -
Apr10g2248 1256 Gene3D ABC transporter type 1, transmembrane domain 88 917 IPR036640 GO:0005524|GO:0016021
Apr10g2248 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1242 IPR003439 GO:0005524
Apr10g2248 1256 CDD ABC_MTABC3_MDL1_MDL2 351 592 - -
Apr10g2248 1256 SUPERFAMILY ABC transporter transmembrane region 669 990 IPR036640 GO:0005524|GO:0016021
Apr10g2248 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 316 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr10g2248 1256 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524
Apr10g2248 1256 SUPERFAMILY ABC transporter transmembrane region 7 332 IPR036640 GO:0005524|GO:0016021
Apr10g2248 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 592 IPR027417 -
Apr10g2248 1256 ProSitePatterns ABC transporters family signature. 490 504 IPR017871 GO:0005524
Apr10g2248 1256 Pfam ABC transporter 1024 1173 IPR003439 GO:0005524
Apr10g2248 1256 Pfam ABC transporter 369 518 IPR003439 GO:0005524
Apr10g2248 1256 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 11 1247 IPR039421 -
Apr10g2248 1256 SMART AAA_5 1033 1219 IPR003593 -
Apr10g2248 1256 SMART AAA_5 378 564 IPR003593 -
Apr10g2248 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 351 587 IPR003439 GO:0005524
Apr10g2248 1256 Gene3D - 349 621 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2248 Apr-Chr10 34735167 34740050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2248 21 595 Calmodulin-binding Proteins AT2G36910 36.364 1.06e-102 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2248 K05658 - gmx:100804664 2110.49