Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2243 ATGTTAGGGGAAGAGGAGAAGGAGAAGGCCACCACAGGTAACGGTGTTGGAAGGAAAACCTATTCTCGTTCAGTTTCATGGAGTGATAGGTCCCCTAATAGCCGTAGTAAACCACCAACAAATAGCAAACCACGATCACTGTTGCCACCCCTTCAACCTCTTTCAATCAACAAGCGTAACGTGGAGGAATGGCCTAGTGCGGGTTCTGATGATCTTGGAGTTTGGCCACTTCCACAAACTCCAAGAGGCTCCATCAGACCCTATGATTCAAGTCAACCCACCAAGGATTTTCTGTTCAAGAGGGACAAATTGGCTTTCTTTGATAAGGAGTGTTCAAGAATTGCCGAGCATATATACTTGGGGAGTGACACAGTGGCCAAGAACCATGAACTCCTTAGGCAAAATGGAATAACACATGTGCTCAACTGTGTTGGGTTCGTTTGTCCTGAGTATTTCAAAAGTGACTTTGTGTACAAGACACTTTGGTTGCAAGATAGCCCCACTGAGGACATCACAAGTATTCTCTATGATGTGTTTGATTACTTTGAAGATGTTCGCGAGCAAGGTGGGCGTGTCCTTGTCCATTGCTGTCAAGGGGTTTCTCGATCAACGGCTTTGGTTATTGCTTATCTCATGTGGAGGGAGGGTCAGAGCTTTGAAGATGCTTTTCAGTTTGTGAAGACTGCAAGAGCAGTGACCAACCCAAATATGGGTTTTGCTTGTCAACTTTTGCAGTGTCAGAAAAGGGTTCATGCTATGCCTGCAAGTCCAAATTCTATTCTCAGGATGTACCGGATGGCTCCTCATTCCCCCTATGACCCTCTTCATTTGGTCCCCAAAATGGTAAACCAGCCTAGTGCACAAGCACTTGATTCTCGTGGGGCGTTCATTATTCATATTCCTTCTGCTATTTATGTTTGGAATGGAAAATATTGTAACTCGGTGATGTCATGCAATGCAAGGAGTGCAGCCTTTCAGGTCATACGTTATGAGGGGGCAAAGGGTCCAATTCTGAGAATCCATGAAGATGAAGAGCCACCTGAGTTTTGGATTGCTTTTTCTAATGAGCTAGACTTATCAGATAATTCTGACAAAGATGGGGTGGTGGAACCGGTTTTGCCTTCTGAAGGCATGGAGAGTGGTCCGAGAAAAGTTGATGGATATGATTTGGACTATGAGATTTTCCACAAGGCACTTGATGGTGGGGTTGTTCCACCTTTTTGTGTGTCTAATGCAGGATCAGAAACTTGCCTTCCTGCTAGAGAACACGGTTGGGCAAGACTGAGGAGGAAGTTTGCTAGTGGTGTCATGAAAGGGTTGCTCACATCCCCAAAATGGAACTGTGATGCTGATAAATGTGAAACCCCATGCAATGATCAATCCATTGTAATTGTGGAAGAAGAAAACCAACATTCTGTTGCTGATCCTTTGTCACCATCATCAAATCATCCTTGTAGTTCACCAGATTCCCTTGAATGTTATCTAAATACCAGCTTAGGCAGGGAAAAGAATAGTCCTGAAGCCATGGAATTGTCTGTTTCCGGTGCTGCTTCATCACTGCCACTGTCTCCTTCCACATCAAATCCTTTTCCTATTTTTCTAAGCAACAGCCCCAAATTCAATTCCAAGTCACCAACACTTTCACCTTCAAGTTCTGATTACGCAAGTTCATTTACTTTTTCACCATCCTCTACCAACTGGTCTGACTTATCATTTGTGTCTTCTCGGCAACCATCGCCGTCTGGCCTTGAATCAGCTGAACCCATTTATGTTAAAGATGCATCTTTCTCAGAAAGTTCCTCTTTACTTCACAAAGAAGTTGACTCTTCACCCTCGGAGGCATTTTCAGCTAAACACAACTTGGGAGAGGGAAACTTCTGTTTTCCATTGAAAGGATTTTCCCTCTCCATTGCAGAGCGCAGAGGGAGTAATCCACCACCTCGGATGTTGCTATCCTCGGCCAATGAATCCTCTCACGTACACAAGAACCTGGAGGACTGCACCAGATAA 2010 0.4453 MLGEEEKEKATTGNGVGRKTYSRSVSWSDRSPNSRSKPPTNSKPRSLLPPLQPLSINKRNVEEWPSAGSDDLGVWPLPQTPRGSIRPYDSSQPTKDFLFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQNGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWREGQSFEDAFQFVKTARAVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPSAQALDSRGAFIIHIPSAIYVWNGKYCNSVMSCNARSAAFQVIRYEGAKGPILRIHEDEEPPEFWIAFSNELDLSDNSDKDGVVEPVLPSEGMESGPRKVDGYDLDYEIFHKALDGGVVPPFCVSNAGSETCLPAREHGWARLRRKFASGVMKGLLTSPKWNCDADKCETPCNDQSIVIVEEENQHSVADPLSPSSNHPCSSPDSLECYLNTSLGREKNSPEAMELSVSGAASSLPLSPSTSNPFPIFLSNSPKFNSKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSRQPSPSGLESAEPIYVKDASFSESSSLLHKEVDSSPSEAFSAKHNLGEGNFCFPLKGFSLSIAERRGSNPPPRMLLSSANESSHVHKNLEDCTR* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2243 669 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 230 IPR000387 GO:0016311|GO:0016791
Apr10g2243 669 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 102 252 IPR029021 -
Apr10g2243 669 ProSitePatterns Tyrosine specific protein phosphatases active site. 194 204 IPR016130 GO:0016311|GO:0016791
Apr10g2243 669 SUPERFAMILY Actin depolymerizing proteins 256 360 - -
Apr10g2243 669 ProSiteProfiles Dual specificity protein phosphatase domain profile. 110 252 IPR020422 GO:0006470|GO:0008138
Apr10g2243 669 Gene3D Protein tyrosine phosphatase superfamily 91 252 IPR029021 -
Apr10g2243 669 Pfam Dual specificity phosphatase, catalytic domain 118 248 IPR000340 GO:0008138|GO:0016311
Apr10g2243 669 CDD DSP 111 245 - -
Apr10g2243 669 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 644 - -
Apr10g2243 669 MobiDBLite consensus disorder prediction 644 669 - -
Apr10g2243 669 Gene3D Severin 262 359 IPR029006 -
Apr10g2243 669 MobiDBLite consensus disorder prediction 1 90 - -
Apr10g2243 669 SMART dsp_5 110 249 IPR020422 GO:0006470|GO:0008138
Apr10g2243 669 MobiDBLite consensus disorder prediction 15 42 - -
Apr10g2243 669 PANTHER MKPA PROTEIN 1 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2243 Apr-Chr10 34703497 34708672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2243 28 146 Protein tyrosine phosphatase (PTP) family AT3G55270 50.382 9.08e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2243 - - gmx:100775448 1000.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1276 8 17823250 17825797 Apr10g2243 10 34703497 34708672 PCT