Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2239 ATGGGAGTGTTCACATTCGTGCTACGCAAATCCGGCGCCGAATGGACGGCGAAGCAACATTCCTGCGACATCGAGGAGTCATCGGAGTCCACTTTCGACATCCAAAGAAAGCTCGTCAATGCCGCTCGCGCCGTTGATTCCTCCGGCGCTGTTCAGTCCTCTTTCTCTTTCGTTTCACCTTCCTCCGCCGTTTTCCAGGTGATTGTGGGTGGTGCAGTATTTGTTGGTGGTGGTGTAACTGCAGCTGCTGCTCCTGCAGGAGGTGCTGCCCCCGCTGGTGATGCTGCCCCGGCTGCAGAGAAGAAAGAAGAAAAAGTTGAGGAAGAGGAGGAGGATGATGATTTGGGATTGTCACTCTTTGATTAG 366 0.5383 MGVFTFVLRKSGAEWTAKQHSCDIEESSESTFDIQRKLVNAARAVDSSGAVQSSFSFVSPSSAVFQVIVGGAVFVGGGVTAAAAPAGGAAPAGDAAPAAEKKEEKVEEEEEDDDLGLSLFD* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2239 121 Pfam 60s Acidic ribosomal protein 49 120 - -
Apr10g2239 121 MobiDBLite consensus disorder prediction 85 121 - -
Apr10g2239 121 MobiDBLite consensus disorder prediction 105 121 - -
Apr10g2239 121 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED 1 121 IPR044252 GO:0003735|GO:0005840
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2239 Apr-Chr10 34681696 34683072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2239 1 68 Cytoplasmic Ribosomal Protein Gene Family AT5G57290 66.176 1.95e-26 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2239 K02942 - gmx:100804776 100.908