Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2236 ATGGGTCTCTCAAATTTTCCAAGCGCATCTGAAGGGGTGCTACCAGTGCTTGTGATGAACACAGTTCTCTCAGTGGCTTTGTTAAAGAACATATTTAGATCCTTGCTTCAAGTAGTTGTTGGTAGTGGCAATAATACTCCAAGCACTTCCTCTTACTCTTCAAGTATTGGACAAGAGTCCTATGAAGATGATGAGGGTTCAAGGGAAAGAAGGGTGTCAATAACTCAATACAAGTCATTGTGCCACAACAAGTCCAACATAGGCACAAGTATTGCTATGGCGGAGTGCTGCGTTTGTTTGTGTGGTTTTGAGGCCAATCATGAGGTGAGCCAATTGCCTTGCAAGCATTTCTTCCACAGAGGCTGCTTAGACAAATGGTTTGATAACAAACACACCACATGTCCTTTATGTCGTTCCATCGACTAA 426 0.4296 MGLSNFPSASEGVLPVLVMNTVLSVALLKNIFRSLLQVVVGSGNNTPSTSSYSSSIGQESYEDDEGSRERRVSITQYKSLCHNKSNIGTSIAMAECCVCLCGFEANHEVSQLPCKHFFHRGCLDKWFDNKHTTCPLCRSID* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2236 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 141 IPR013083 -
Apr10g2236 141 MobiDBLite consensus disorder prediction 44 60 - -
Apr10g2236 141 SUPERFAMILY RING/U-box 95 139 - -
Apr10g2236 141 SMART ring_2 96 137 IPR001841 -
Apr10g2236 141 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Apr10g2236 141 SMART ringv_2 95 138 IPR011016 GO:0008270
Apr10g2236 141 MobiDBLite consensus disorder prediction 44 69 - -
Apr10g2236 141 PANTHER - 1 140 IPR044249 -
Apr10g2236 141 Pfam Ring finger domain 95 138 IPR001841 -
Apr10g2236 141 PANTHER F21J9.24-RELATED 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2236 Apr-Chr10 34666863 34667489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2236 1 139 C3H Transcription Factor Family AT2G04240 36.364 2.95e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2236 K16285 - gmx:100811790 203.371