Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2231 ATGACCTTACGCGAGAACTTCAAGGCAACCATGAGCGTCATGCTGTTGGCGTTCTTATCCGCGTTCATTTTCACTGGCTTCTTCTCGCTCTACCTCCGCCATTGCTCCCGCAGTTTTGGTGGCAGAAGCAACCCCATCACCGCTGCCGTCGACATCTGCCGCCGCGGATTCAACCGGGAAGTGATCAACAGGTGCCCCATTTTGGTGTACTCGACGGTGAAGGAGCTGAAAATGGGGAAAGGAGCGTTGGAATGCGCAGTGTGTTTAAGCGAGTTTGAAGAGTGCGACAAGATACGGTTACTGCCAAAGTGTCATCATGTTTTCCACCTTGATTGCATCGATGGATGGTTACTCTCTCACATGAATTGTCCTGTTTGTCGCGCTAAGCTCACCCATGATAGTGTCGACGACGTTGCCATCCCTGTCATCCCACCGCAACAAGAATTGAGACAGAGCAGCAGCACGGCCGTTACCGTTGAAACAGAAAATGAAACGGAAATGGTTGTGGCACAGAGGGTTGTTATTCCGTCACCTGAATCGAGAATGTTGTTGCCGAGGTCGCATTCAACGGGTCATTCTTTTGTGGGGCCTGAGGAGGACGTGGACAGGTACTCTCTGAGGTTGCCGGAACACGTGAGGAAGCAGCTTGCGGGGAGTGAGAGGGTGGTTTTTGAAGGCGTGTGGTGTTCGAAGAGTCACGAGGAGCGGTGGTCGTTGTCGATGTCGATGACTCCGCCGTTGGTTTCTAATGGTGTTGTCGATTCAGGTTTAAGGACTTGCTGGACTCCACTTAGAATGTCGTTTAACAGGGCCCAGGGAACTCGGAATATTCCTCCCGTTTGA 843 0.5196 MTLRENFKATMSVMLLAFLSAFIFTGFFSLYLRHCSRSFGGRSNPITAAVDICRRGFNREVINRCPILVYSTVKELKMGKGALECAVCLSEFEECDKIRLLPKCHHVFHLDCIDGWLLSHMNCPVCRAKLTHDSVDDVAIPVIPPQQELRQSSSTAVTVETENETEMVVAQRVVIPSPESRMLLPRSHSTGHSFVGPEEDVDRYSLRLPEHVRKQLAGSERVVFEGVWCSKSHEERWSLSMSMTPPLVSNGVVDSGLRTCWTPLRMSFNRAQGTRNIPPV* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2231 280 SMART ring_2 85 126 IPR001841 -
Apr10g2231 280 CDD mRING-H2-C3H2C2D_ZSWM2 84 127 - -
Apr10g2231 280 PANTHER RING FINGER DOMAIN-CONTAINING 6 219 - -
Apr10g2231 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 137 IPR013083 -
Apr10g2231 280 SUPERFAMILY RING/U-box 84 132 - -
Apr10g2231 280 ProSiteProfiles Zinc finger RING-type profile. 85 127 IPR001841 -
Apr10g2231 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 6 219 - -
Apr10g2231 280 Pfam Ring finger domain 84 127 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2231 Apr-Chr10 34648348 34649190 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2231 10 216 Rapid Response to Elicitors AT3G05200 41.256 3.19e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2231 K10664 - mus:103969152 187.193