Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2228 ATGAGTTTACATCCTAGAACGCTGTTCCATCCGTACCTTGGTTCAAGTGATACTATCACAGCATGGAGAACCAACCATAGCCCAACACCTTCACCTCTTCACTCACCAGTCTCACTGTCATTTCCGTGGTTCCCTCCCATCCATGATGAAGACCACATGACTCAAAACTATGTACTTATCATTATGGTTGTCATAGCTAGCACTGGTGGTGTAGTCATGTTACTCGTCACCATGTCCAAAATCCTAAGGTACTATAAATCAAGGAGATACTATGTTAGCAGAAGAAACCCACCAATACTATTTGACATTCGTGGAGATTTTTCCTTTTCTAATGATGAGGAACGAGCCATTGCACACCCCATATGGTTCATCTCCACAGAGGGTCTCCAAGAATCCATCATAGACTCCATCACAGTTTGCAAATACAGAAAAGATGAAGGATTGATAGAAGGAACTGAGTGCCTTGTTTGCCTCAGTGAGTTTCAACAAGAAGAAAGTCTCAAACTTTTGCCAAAGTGCAGCCACGCTTTTCATGTACCTTGCATTGATACATGGTTGAGATCACATAAAAATTGTCCCTTGTGCCGTGCCCCTATTGTTCATGAAGCTAGTGGCATTGAACTAGTGAGAACCATAGAGCCTGATCCAAGTTTTTCTGATCTGAATGAATATATAGAAGAAAGTGGAGTGAGGGTTGCTGTTGCAGCTGAAGATCCCAGTGAAGATCATTGTAGCAAGATTAGTTGCCACTCTTCAGTTCCAATTGATTCTGCTTCTGCTGTTACTGCACATGAATTTAGTTCTGTCTCGATGGATTCATCTTCTGCTTCAATAGTATTTTGTGATGCCTTGGATTTAAATTCTGATATAGAAAGTTCAGACTCAGACATCAACTTGGTTAAAAAGAATGTTTCAATTTCAAGTAAGCATGGCAGTGAGAGTTCAACAAACAATGAGAAGCATTTTTCGCTGAGAAGATCTTTTTCACATAACAGAAAATTCATATTTTCCAGACATAGCAGAAGCCATAGTTCAACTCTTCCCCTGTAA 1050 0.4038 MSLHPRTLFHPYLGSSDTITAWRTNHSPTPSPLHSPVSLSFPWFPPIHDEDHMTQNYVLIIMVVIASTGGVVMLLVTMSKILRYYKSRRYYVSRRNPPILFDIRGDFSFSNDEERAIAHPIWFISTEGLQESIIDSITVCKYRKDEGLIEGTECLVCLSEFQQEESLKLLPKCSHAFHVPCIDTWLRSHKNCPLCRAPIVHEASGIELVRTIEPDPSFSDLNEYIEESGVRVAVAAEDPSEDHCSKISCHSSVPIDSASAVTAHEFSSVSMDSSSASIVFCDALDLNSDIESSDSDINLVKKNVSISSKHGSESSTNNEKHFSLRRSFSHNRKFIFSRHSRSHSSTLPL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2228 349 Pfam Ring finger domain 153 196 IPR001841 -
Apr10g2228 349 CDD RING-H2_EL5_like 153 196 - -
Apr10g2228 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 204 IPR013083 -
Apr10g2228 349 SUPERFAMILY RING/U-box 144 201 - -
Apr10g2228 349 PANTHER RING-H2 FINGER PROTEIN ATL54 32 340 - -
Apr10g2228 349 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Apr10g2228 349 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 32 340 IPR044675 -
Apr10g2228 349 SMART ring_2 154 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2228 Apr-Chr10 34633896 34634945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2228 59 200 C3H Transcription Factor Family AT1G72220 47.945 9.65e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2228 - - aprc:113851306 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1261 8 17657399 17658860 Apr10g2228 10 34633896 34634945 PCT