Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2226 ATGAAGAAAACCCCTCACCCCAACCCCTACGCCACCATGCGCCGCCGCGACTTCCCTCGTCAACCACCCCAAGCCGGTTCCAATCCCCTCCCCGTCAACCGTTCCTACCATCACTGGAAGTCCCGATTCCCCCCCAACGCCCGATTCGACCGTCCACCGGAGCGAAATTTCGTCGTCGAGCTCCGCCTTGGTCGCCGCGCCCTCCGCCGCGACCACGTCGAGGCCTTGATTGACAAATGCGTGTCCAAGCCGGAGTACTTCTCGTTCTACCCCGGCGACTCGGTCGCCGCCGCGCTCAATTACCGGCGGTGGGAGGACGCGCGCGACGCCGTCGTTTGGTTCTGGGAATCGCGCCTCACCGAGGTTCACGATTTCTCGCCGGTGGTGGCCTCGAACGTTGTCGACAGGGTGGACTTGGAAGGTCGCCTCCGAAGCGTGTTCGCGAAGCACGTGAAGGGGTTGATGGAAGGCAAGGAGATGAAGCGTTGGGTAGCTGAAAGGGAACGGTTATCGAAAGAGATTGCGAGTGTTAGGAGTTTGCTGGGTACGCGATTGCCAATTGGTGTCAACCTGCAGATGATGATGAAGAAGAAAGGACTTGTTACTGAGAAGAATTTGGTTGAAAGGAGAATAAAGGAGTTTGAGTGTGCAATGGAGTGCGTGTTGAAGTATCTGGAGGAGGATGAGGTTGTTGATGTTCTTTCCGTGTTTAGCTTTAATGGAAGTTTTGATTGGAAGCGGATTCACTGCATGATCACCAGGGAGTGTCAGAGACTTGATGATGGATTGCCAATTTATGCTTATCGGAGGGATATTATTCGCGAAATCCACCGTCAACAGATAATGGTGTTAATTGGGGAGACCGGTTCTGGCAAGAGTACACAGTTGGTACAGTTCCTTGCCGATTCAGGCATTGGCGCTGATGAATCCATTGTATGCACCCAGCCTCGCAAGATTGCTGCCAAATCATTGGCTCAAAGAGTCCAGGAAGAAAGCAATGGATGTTATGAAGACTATTCAATCAAATGTCGTTCTACATTTTCATCCATGCACAAGTTTGATTCCAGGATAACATTCATGACCGATCACTGTTTACTGCAGCACTACATGAGTGATAAAAATTTGTCTGGGGTCTCGTGCATCATAATTGATGAGGCGCATGAAAGGAGCTTAAACACTGATCTACTGTTGGCATTGTTAAAGAGTTTACTTTGTAGGAGGGCTGAAATGCGGCTTATCATTATGTCTGCTACAGCCAATGCAATGCAGCTATCGGATTACTTCTATGGTTGTGGAATTTTTCATGTGCTGGGGAGATGCTTTCCCGTAGATATCAGATATGTTCCTTCTGACCATGCAGGACATTCTGGTTCTGCTGTTGTTGCTTCGTATGTTTCTGATGTGGTGAGAATGGCAACTGAGATTCACAAAACAGAAAAGGAGGGAACTATTCTAGCCTTTTTGACATCACAGATAGAAGTAGAATGGGCATGTGAAAAGTTTGGAGTTCCTTCTGCAGTTGCTTTGCCCTTGCATGGAAAACTTTCATCTGAAGAGCAATTTCATGTTTTTCAGAATTACCCTGGAAAAAGAAAGGTCATATTTTCAACAAATCTTGCAGAGACATCACTTACAATTCCTGGTGTTAAGTATGTGATAGATTCTGGGTTGGTTAAAGACAGTAGATTTGATCCTGGCAGTGGTATGAGTGTACTAAAAGTTTGCTGGATCAGCCGGAGTTCTGCTGATCAACGTGCTGGTCGTGCTGGGAGGACTGAACCTGGTACGTGCTATAGGCTGTATTCGGAAGCTGATTATCATTCTATGGAACTAAATCAAGAGCCTGAGATTCGAAGAGTTCATCTTGGTGTAGCAGTTTTGAGGATCCTTGCTTTAGGTGTGAAGAATGTGCAGGATTTTGATTTTGTGGATGCTCCAAGTCCTACCTCTATTCAGATGGCAATTAGGAATCTAATTCAATTAGGAGTCATTGAAGTGACCAATAATGTTCACGAATTAACTTCTGAGGGGAGGTGCTTGGTAGGAATGGGAATTGAACCCAGGCTTGGTAAACTTATTCTTGGCTGTTTCAAACAATGTTTGGGCAGAGAAGGTATTGTCCTTGCTGCTGTGATGGCCAATGCTAGTAGCATTTTTTGCAGAGTTGGTACTGAAGATGACAAAAAAAGATCTGACTGTCTTAAAGTGCAGTTTTGCCATTGTGACGGTGACCTCTTTACTCTTCTCTCTGTGTACAAGGAATGGGAAACTTTGCCACCAGAAAAGAAGAACAAGTGGTGCTGGGAAAACAGCATCAATGCCAAATCTTTGAGGAGGTGCCAAGACACAATTTTGGAGTTAGAAGCATGTCTTGAGCGTGAACTTGACCTTATTACACCATCATACTGGCGTTGGCACCCTTATATTCCCTCTGATCATGATAAGAATTTGAAAAAGGTTATACTGTCCTCGCTTGCTGAGAATGTAGCCATTTTCTCTGGCTCAAATCACCTTGGTTATGAGGTGGCACAAACTGGAAAACATGTCCAACTACACCCATCTTGTTCATTGCTTGTGTTTGCTCAGAAACCGAGTTGGGTTGTTTTCAGTGAGCTTCTTTCAGCTTCTAGTCAATATTTGGTCTGTGTAAGTGCTTTTGACTTTCAATCATTACACAGTCTCTGCCCTGCTCCTTTGTTTGATGTTTCCAAACTGGCAGAGCGACAGTTGCGAATGAGGACGCTGACTGGTTTTGGCTGTATTCTTCTCAAGAGATTTTGTGGGAAAGCAAACAGTAATTTACTTGCCCTTGTTTCACGTATAAGGAAAACTTGTATGGATGAGCGCATCTTCATTGAAGTGAATGTTGACCAGAATGAAATCCAGCTCTATGCCACTTCTAATGATATGAATATGGCCCTTGGGCTGGTTAATGATGTTTTAGAGTATGAGAAAAAAATGTTAAGTGCTGAATGCATGGAAAAATTTTTGTATCATGGTTCTGGTTTCTCTCCACCTGTAGCTTTGTTTGGGTCTGGTGCTGAGATAAAGCATTTGGAACTTGAGAAACGTTCCTTGAGTGTTGATGTGTGTCACCCGAAGAGAAGTGCAATTGATGACAAGAAGCTCTTAATGTTTTTTGGCAAAAATACCTCTGGTTGTATCTGCTCTGTGCACAAATTCACAGGCATGATTAAGGATGAGGATGGAGAAAAGTGGGGCAGGATAACATTTCTGTCCCCTGAAGCTGCCAGAAGAGCTGCTGAGCTAGATGGTGAAGAGTTTTGTGGCTCCCCCTTGAAAATTATTCCTGCACAACTGGGAGGAGATAAAATATTTTCATTTCCTGCTGTTAAAGCAAAAATTTGTTGGCCTCGGAGGCCTAGCAAGGGATTTGCCATAGTTAAATGTGATATAAAGGATGTCAATTTTATTCTGAGAGATTTCTATAACCTTGCTGTCGGAGGAAGGTATGTTCGATGTGAAATTGGCAAAAAGTCTATGGACAGTATTGTGGTAAGTGGGCTGGACAAAGAGCTCTCAGAAGCTGAAATACTGGATGCACTGAGAACTGCTACAAGTAGAAGGATTCTGGATTTTTTCTTGGTGAGAGGAGATGCTGTTGGAAATCCGCCATGTAGTGCTTGTGAAGAGGTGCTCCTAAAGGAAATTTACCCCTTTATGTCCAAAAGAAATCCTCAAATTGGTTCATGCCGAGTTCAGGTGTTTCCACCTGAGCCAAAGGATGCTTTCATAAGAGCTTTAATCACTTTTGACGGAAGATTACATTTGGAGGCAGCAAAAGCTTTGGAGCAAATTGAAGGGAAGGTTTTGCCTGGATGTCTTTCATGGCAAAAGATAAAATGCCAGCAATTGTTTCATAGTTCCTTGACATTTCCTGTTCCAGTGTATTGTGTGATTAAAGAACAACTGGATAAAGTACTTGCAGGCTTCAACAATTGTAAAGGTCTTGAGTGGAGCCTAGAGAGGACACTTAATGGTTCCCACCGAGTGAAGATTACAGCCAATGCCACGAAGACAGTGGCAGAATTTAGAAGACCTCTTGAAGAACTATCGAGGGGAAAAACAATTGAACATGACAGCCTCACCCCTGCAGTTCTACAGCTCATGTTGTCCAGGGATGGCTTTAATCTTAAAAGGTCATTGCAGCAAGAGACTGGAACTTATATTCTTTTTGACAGGCAAAACCTGAATTTACGGGTGTTTGGTTCTCCGGACAAGATTGCTTTGGCTCAGCAGAAGGTGATTCAATCCCTACTCTCTCTCCATGAAGGAAAGCAGTCAGAAATCCATCTGAAAGGGAAGGATCTACGTCCTGACTTAATGAAGCAAGTGATTACGAATTTTGGGCCAGATCTCCATGGACTAAAAGAGAAGGTACCAGGGACAAATCTTACGCTCAGCACACGCCGCCAGATAATCTTTCTTCACGGTAACAAGGAGTTGAAACCAAGAGTAGAGGAAATAATTTTTGAGATTGCAAGTTCAAGCCATCATTTGGTTGAGAATTTTGACACAGGACCTAATTGTCCTATTTGCTTGTGTGAGGTTGATGATGGATACCGGCTTGAAGGCTGTGGTCATGTGTTCTGCCGGTTGTGTCTAGTGGAACAATGTGAATCTGCTATAAAAAACCAAGGTAGTTTCCCAATATGTTGCACTCACGGGGGCTGTGGAGAACATATTCTACTTACAGATTTGAGATCTCTCTTATCAAGTGATAAGGTGGAGGAACTTTTCAGGGCTTCTTTGGGAGCTTTTGTGGCATCCAGTGGGGGAACTTACAGGTTTTGTCCTTCTCCTGACTGCCCCTCAATTTATCGGGTTGCAGATCCTGGGACAGCTGGCGAACCATTTGTTTGTGGGGCATGTTTTTCAGAGACATGTACCAGGTGCCACTTAGAGTGTCATCCATACATTTCTTGTGAGAGATATCGAGAATTTAAGCAAGATCCGGACTCATCTCTGAAGGAGTGGTGCAAAGGGAAAGAACAAGTTAAGAGCTGCTCGGCCTGTGGATATGTAATTGAGAAGGTTGATGGGTGCAACCACGTTGAGTGCAAGTGTGGAAAGCATGTCTGCTGGGTTTGCTTGGAGTTCTTTAGTAGTAGTGATGAATGTTATAACCATTTGAGAAATATACACATGGCCATCATATAA 5181 0.4437 MKKTPHPNPYATMRRRDFPRQPPQAGSNPLPVNRSYHHWKSRFPPNARFDRPPERNFVVELRLGRRALRRDHVEALIDKCVSKPEYFSFYPGDSVAAALNYRRWEDARDAVVWFWESRLTEVHDFSPVVASNVVDRVDLEGRLRSVFAKHVKGLMEGKEMKRWVAERERLSKEIASVRSLLGTRLPIGVNLQMMMKKKGLVTEKNLVERRIKEFECAMECVLKYLEEDEVVDVLSVFSFNGSFDWKRIHCMITRECQRLDDGLPIYAYRRDIIREIHRQQIMVLIGETGSGKSTQLVQFLADSGIGADESIVCTQPRKIAAKSLAQRVQEESNGCYEDYSIKCRSTFSSMHKFDSRITFMTDHCLLQHYMSDKNLSGVSCIIIDEAHERSLNTDLLLALLKSLLCRRAEMRLIIMSATANAMQLSDYFYGCGIFHVLGRCFPVDIRYVPSDHAGHSGSAVVASYVSDVVRMATEIHKTEKEGTILAFLTSQIEVEWACEKFGVPSAVALPLHGKLSSEEQFHVFQNYPGKRKVIFSTNLAETSLTIPGVKYVIDSGLVKDSRFDPGSGMSVLKVCWISRSSADQRAGRAGRTEPGTCYRLYSEADYHSMELNQEPEIRRVHLGVAVLRILALGVKNVQDFDFVDAPSPTSIQMAIRNLIQLGVIEVTNNVHELTSEGRCLVGMGIEPRLGKLILGCFKQCLGREGIVLAAVMANASSIFCRVGTEDDKKRSDCLKVQFCHCDGDLFTLLSVYKEWETLPPEKKNKWCWENSINAKSLRRCQDTILELEACLERELDLITPSYWRWHPYIPSDHDKNLKKVILSSLAENVAIFSGSNHLGYEVAQTGKHVQLHPSCSLLVFAQKPSWVVFSELLSASSQYLVCVSAFDFQSLHSLCPAPLFDVSKLAERQLRMRTLTGFGCILLKRFCGKANSNLLALVSRIRKTCMDERIFIEVNVDQNEIQLYATSNDMNMALGLVNDVLEYEKKMLSAECMEKFLYHGSGFSPPVALFGSGAEIKHLELEKRSLSVDVCHPKRSAIDDKKLLMFFGKNTSGCICSVHKFTGMIKDEDGEKWGRITFLSPEAARRAAELDGEEFCGSPLKIIPAQLGGDKIFSFPAVKAKICWPRRPSKGFAIVKCDIKDVNFILRDFYNLAVGGRYVRCEIGKKSMDSIVVSGLDKELSEAEILDALRTATSRRILDFFLVRGDAVGNPPCSACEEVLLKEIYPFMSKRNPQIGSCRVQVFPPEPKDAFIRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQQLFHSSLTFPVPVYCVIKEQLDKVLAGFNNCKGLEWSLERTLNGSHRVKITANATKTVAEFRRPLEELSRGKTIEHDSLTPAVLQLMLSRDGFNLKRSLQQETGTYILFDRQNLNLRVFGSPDKIALAQQKVIQSLLSLHEGKQSEIHLKGKDLRPDLMKQVITNFGPDLHGLKEKVPGTNLTLSTRRQIIFLHGNKELKPRVEEIIFEIASSSHHLVENFDTGPNCPICLCEVDDGYRLEGCGHVFCRLCLVEQCESAIKNQGSFPICCTHGGCGEHILLTDLRSLLSSDKVEELFRASLGAFVASSGGTYRFCPSPDCPSIYRVADPGTAGEPFVCGACFSETCTRCHLECHPYISCERYREFKQDPDSSLKEWCKGKEQVKSCSACGYVIEKVDGCNHVECKCGKHVCWVCLEFFSSSDECYNHLRNIHMAII* 1727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2226 1726 SUPERFAMILY RING/U-box 1516 1592 - -
Apr10g2226 1726 CDD RRM_SF 1038 1102 - -
Apr10g2226 1726 Pfam DEAD/DEAH box helicase 270 420 IPR011545 GO:0003676|GO:0005524
Apr10g2226 1726 Gene3D - 1628 1724 - -
Apr10g2226 1726 SUPERFAMILY RING/U-box 1671 1718 - -
Apr10g2226 1726 Pfam Helicase associated domain (HA2) 654 748 IPR007502 GO:0004386
Apr10g2226 1726 Gene3D - 615 658 IPR042035 -
Apr10g2226 1726 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 467 633 IPR001650 -
Apr10g2226 1726 SMART helicmild6 495 593 IPR001650 -
Apr10g2226 1726 MobiDBLite consensus disorder prediction 1 31 - -
Apr10g2226 1726 PANTHER ATP-DEPENDENT RNA HELICASE 96 1477 - -
Apr10g2226 1726 PANTHER ATP-DEPENDENT RNA HELICASE 1551 1641 - -
Apr10g2226 1726 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 273 437 IPR014001 -
Apr10g2226 1726 SMART ibrneu5 1584 1649 IPR002867 -
Apr10g2226 1726 SMART ibrneu5 1650 1714 IPR002867 -
Apr10g2226 1726 Pfam IBR domain, a half RING-finger domain 1593 1649 IPR002867 -
Apr10g2226 1726 Gene3D - 246 439 IPR027417 -
Apr10g2226 1726 ProSiteProfiles Zinc finger RING-type profile. 1517 1559 IPR001841 -
Apr10g2226 1726 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 379 388 IPR002464 -
Apr10g2226 1726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1514 1593 IPR013083 -
Apr10g2226 1726 Gene3D - 440 612 IPR027417 -
Apr10g2226 1726 ProSiteProfiles TRIAD supradomain profile. 1513 1721 IPR044066 -
Apr10g2226 1726 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1551 1641 - -
Apr10g2226 1726 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 96 1477 - -
Apr10g2226 1726 CDD DEXHc_RHA-like 280 436 - -
Apr10g2226 1726 ProSitePatterns Zinc finger C2H2 type domain signature. 1701 1722 IPR013087 -
Apr10g2226 1726 CDD SF2_C_RHA 441 601 - -
Apr10g2226 1726 SMART ha2_5 653 749 IPR007502 GO:0004386
Apr10g2226 1726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 757 IPR027417 -
Apr10g2226 1726 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 817 896 IPR011709 -
Apr10g2226 1726 ProSitePatterns Zinc finger RING-type signature. 1533 1542 IPR017907 -
Apr10g2226 1726 SMART ultradead3 261 446 IPR014001 -
Apr10g2226 1726 Pfam Helicase conserved C-terminal domain 475 592 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2226 Apr-Chr10 34624173 34630634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2226 1532 1708 C3H Transcription Factor Family AT2G31770 27.869 8.06e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2226 K12818 - gmx:100810008 2848.15