Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2218 ATGGAAGAGGAGGAAGAGCATGAGGTGTACGGTGGTGAGATCCCCGACGTTGGAGAAATGGAAGGAGACTTCGATCCTCACCATGACTCTGCCGACGTTGACATGTCCGTTGCCGACGACGACGCCGTCAAGGAACTGGACGAGACGAAGAAGCGGTTAACGGAAATTGAAGAGGAAGCCGCGGCTCTTCGCGAAATGCAAGCCAAGGTCGAGAAGGAGATGGGCGCTGTTCAAGACCCTGCCAATGCAGCTGCTTCTCAGGCCAGCAGGGAGGAGACAGATTCTCGATCTGTTTTTGTTGGCAATGTTGATTATGCGTGCACACCAGAAGAAGTGCAGCAACACTTTCAATCTTGTGGTACAGTGAACAGGGTTACTATCCCGACAGACAAGTTTCGCCAGCCTAAAGGTTTTGCTTATGTGGAATTCCTTGAAACTGAAGGTGTTCGGGAGGCTCTCCTATTGAATGAATCTGAATTACATGGCCGTCAATTGAAGGTTATGCCGAAGAGGACCAACGTTCCTGGGATGAAACAATTTCGTCCTAGGCGCTTTAATCCTTATATGGGATATCGCTTCAGGAGGCCATATCCTCCTCCTTACTTTTACTCCCCCTATGGAAATGGAAAGGTTCCCAGGTTTAGAAGGCCAGGTCGGTACATGCCATACTACTAG 675 0.4978 MEEEEEHEVYGGEIPDVGEMEGDFDPHHDSADVDMSVADDDAVKELDETKKRLTEIEEEAAALREMQAKVEKEMGAVQDPANAAASQASREETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTIPTDKFRQPKGFAYVEFLETEGVREALLLNESELHGRQLKVMPKRTNVPGMKQFRPRRFNPYMGYRFRRPYPPPYFYSPYGNGKVPRFRRPGRYMPYY* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2218 224 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 222 - -
Apr10g2218 224 PANTHER - 4 222 - -
Apr10g2218 224 Gene3D - 34 168 IPR012677 -
Apr10g2218 224 Coils Coil 39 73 - -
Apr10g2218 224 CDD RRM_II_PABPs 97 167 - -
Apr10g2218 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Apr10g2218 224 MobiDBLite consensus disorder prediction 1 33 - -
Apr10g2218 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 172 IPR000504 GO:0003723
Apr10g2218 224 SUPERFAMILY RNA-binding domain, RBD 87 195 IPR035979 GO:0003676
Apr10g2218 224 SMART rrm1_1 97 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2218 Apr-Chr10 34560145 34564948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2218 97 192 Eukaryotic Initiation Factors Gene Family AT2G36660 28.125 4.77e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2218 K14396 - jre:109014561 365.54