Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2213 ATGGCCATTGTACCTTTTGGTAGTACATCAGCTACTCAATGGGGAATTCGTCCTCAGCTTTTCGCAAGATCGACTACGACAGGGAAGATTGCATCCTTCAACCACAGTGTTGCAAGCAGGATAAGCGTTACGTCTGCACCAAGTTCAAGCTTTTTTGCTCGAGATTCCTTGCGTGCACTGTTTGATATAGGTTCATCTCAAACTTTGCATCGTCGCAGGGGATCAAGGTTGATAGTTAGAGCAGATACAGATTTCTATTCTGTTCTTGGGGTGTCAAGAAATTCTACGAAATCTGAAATTAAGAGCGCTTATCGGAAGCTTGCCCGAAATTATCATCCTGATGTGAACAAAGAACCTGATGCAGAACAGAAATTTAAGGAAATTAGTAATGCATATGAGGTCTTATCAGATGATGAGAAACGAACTATATATGACAGATATGGAGAGGCTGGACTTAAAGGTTCAGGAATGGGCATGGGGGATTTCAGCAATCCTTTTGACCTATTTGAGTCACTGTTTGAGGGCATGAGCGGCATGGGTGGCATGGGCAGCAGAGGTTCTTGGAATGGAGCAGTTGATGGTGAAGATGAGTATTATAGTCTTGTTTTGAACTTTAAAGAAGCCGTTTTTGGAGTGGAAAAGGAGATAGAGGTTCGGCGATTAGAGAGCTGTGGAACATGCAATGGTTCAGGGGCTAAACCTGGAACTAAATCATCCAGGTGTAGCACATGTGGTGGCCAGGGTCGGGTTGTCTCGTCTACAAGGACTCCATTGGGCATCTTCCAGCAGTCTATGACTTGCTCGTCTTGCAATGGGACTGGAGAAACTTCAACACCTTGCAATACATGTTCAGGGGAAGGTCGAGTGAGGAAGACAAAGCGTATAAGTCTTAAGGTTCCAGCTGGTGTGGATTCTGGTAGCCGTTTAAGGGTCCGAAATGAAGGCAATGCTGGAAGGCGAGGGGGTGCTCCTGGTGACCTCTTTGTTGTTCTTGAAGTTATCCCAGATCCCGTGCTTAAACGGGATGACAATAACATTTTATACACCAGTAAGGTGTCTTATATTGATGCAATCTTGGGGACTACAGTTAAGGTTCCTACTGTTGATGGCATGGTGGATTTAAAAGTCCCAGCTGGGACTCAACCAGGCTCAACACTTGTTATGGCTAAGAAGGGTGTTCCTGTGCTGAATAAAAAGAACATGAGAGGTGATCAATTGGTTCGAGTGCAAGTTGAAATACCTAAAAAACTGAGCAAAGATGAGCGAAAACTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGCTGCCACCAGTAGGAGATGA 1329 0.4454 MAIVPFGSTSATQWGIRPQLFARSTTTGKIASFNHSVASRISVTSAPSSSFFARDSLRALFDIGSSQTLHRRRGSRLIVRADTDFYSVLGVSRNSTKSEIKSAYRKLARNYHPDVNKEPDAEQKFKEISNAYEVLSDDEKRTIYDRYGEAGLKGSGMGMGDFSNPFDLFESLFEGMSGMGGMGSRGSWNGAVDGEDEYYSLVLNFKEAVFGVEKEIEVRRLESCGTCNGSGAKPGTKSSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGETSTPCNTCSGEGRVRKTKRISLKVPAGVDSGSRLRVRNEGNAGRRGGAPGDLFVVLEVIPDPVLKRDDNNILYTSKVSYIDAILGTTVKVPTVDGMVDLKVPAGTQPGSTLVMAKKGVPVLNKKNMRGDQLVRVQVEIPKKLSKDERKLIEELADLSKGKTAATSRR* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2213 442 Hamap Chaperone protein DnaJ [dnaJ]. 81 437 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Apr10g2213 442 PANTHER BNAA01G34580D PROTEIN 32 441 - -
Apr10g2213 442 CDD DnaJ_zf 224 287 IPR001305 GO:0031072|GO:0051082
Apr10g2213 442 Pfam DnaJ C terminal domain 199 414 IPR002939 -
Apr10g2213 442 CDD DnaJ 84 137 IPR001623 -
Apr10g2213 442 Gene3D - 224 287 - -
Apr10g2213 442 SMART dnaj_3 83 140 IPR001623 -
Apr10g2213 442 SUPERFAMILY HSP40/DnaJ peptide-binding domain 192 347 IPR008971 GO:0006457|GO:0051082
Apr10g2213 442 TIGRFAM DnaJ_bact: chaperone protein DnaJ 84 430 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Apr10g2213 442 Gene3D - 334 442 - -
Apr10g2213 442 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Apr10g2213 442 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 211 291 IPR036410 -
Apr10g2213 442 Pfam DnaJ central domain 224 287 IPR001305 GO:0031072|GO:0051082
Apr10g2213 442 ProSiteProfiles Zinc finger CR-type profile. 211 292 IPR001305 GO:0031072|GO:0051082
Apr10g2213 442 CDD DnaJ_C 195 417 - -
Apr10g2213 442 SUPERFAMILY Chaperone J-domain 80 183 IPR036869 -
Apr10g2213 442 PRINTS DnaJ domain signature 86 104 IPR001623 -
Apr10g2213 442 PRINTS DnaJ domain signature 104 119 IPR001623 -
Apr10g2213 442 PRINTS DnaJ domain signature 120 140 IPR001623 -
Apr10g2213 442 PRINTS DnaJ domain signature 140 159 IPR001623 -
Apr10g2213 442 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 32 441 - -
Apr10g2213 442 SUPERFAMILY HSP40/DnaJ peptide-binding domain 339 425 IPR008971 GO:0006457|GO:0051082
Apr10g2213 442 Gene3D - 194 329 - -
Apr10g2213 442 ProSiteProfiles dnaJ domain profile. 84 148 IPR001623 -
Apr10g2213 442 Pfam DnaJ domain 84 145 IPR001623 -
Apr10g2213 442 Gene3D DnaJ domain 81 185 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2213 Apr-Chr10 34543348 34547202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2213 85 147 C2H2 Transcription Factor Family AT1G74250 43.478 2.71e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2213 K03686 - gmx:100786143 769.615