Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2210 ATGATCAAGTCCAACCCCAATCCGAACCGAAAACCTCACCCGCGGGATCCGGATAACTCCGCCGACCCGCAGGTTCCGCTTCGGAACCTCTCTCAGGTTCGGACCAGAATAGATTCTGTGCAACGCTTCTTATCGCAATCTATCAAAACCAACGCTCCTCTTACCACTGACCAAATCGCCACCGTCTCCAACCAGATCGTCTCCGCCATCCACCAAACAATCGTCAACGGCGCCGCCCTCGTCTCCTACTCCCAAAATTTCACCGCCGCCGGAGCCGCCGTATTGTCACCGGATCCGCTAGATGACGATGCCATCGAAGACTCCGACGACGACTGCGAAATCGTGGAGCTGGACGCCGTGGAATTGCTCGCGGAGCACATCCACTTCTGCGAGATCTGTGGGAAAGGTTTCCGGCGCGACGCGAATCTCCGTATGCACATGCGCGCGCACGGTAACCAGTTCAAGACGCCGGAGGCGTTGGCGAAGCCGTCGGAGGAGGGATCTGGCGGCGCGCGGCGGCGCACGACGCGGTTCTCGTGTCCGTTCGAAGGATGCAACCGGAACAAGCAGCACCGGAAATTCAGGCCGTTGAAGTCGGTGGTTTGCGTGAAGAATCACTTCAAGAGGAGTCACTGTCCGAAGATGTACTCGTGCAATCGGTGCAACAAGAAGAACTTCTCGGTGCTCTCGGATTTGAAGAGTCACATGAAGCACTGCGGAGAGTCGCGGTGGAAGTGCTCTTGCGGAACCACGTTTTCACGCAAGGACAAGTTGTTTGGGCACATTGCGTTATTCGAGGGTCATATGCCTGCACTTGCGTTCGATGAAGAGGAGAAAGGGAAGCAAGTGGTGGAGGAAGATGTGGATCCAATGTTGATGACTGAGAGTGAATTGGGTAATTCTTTTCTCGATGAAGAGTTGCCTGAAGGGTTCTTCGATGATTTTGGGTCCATTGATAACTACTGTTTACGGGAAGTGTTAGGGTTTCCTAGTAATTTGACGTGA 1005 0.5433 MIKSNPNPNRKPHPRDPDNSADPQVPLRNLSQVRTRIDSVQRFLSQSIKTNAPLTTDQIATVSNQIVSAIHQTIVNGAALVSYSQNFTAAGAAVLSPDPLDDDAIEDSDDDCEIVELDAVELLAEHIHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKPSEEGSGGARRRTTRFSCPFEGCNRNKQHRKFRPLKSVVCVKNHFKRSHCPKMYSCNRCNKKNFSVLSDLKSHMKHCGESRWKCSCGTTFSRKDKLFGHIALFEGHMPALAFDEEEKGKQVVEEDVDPMLMTESELGNSFLDEELPEGFFDDFGSIDNYCLREVLGFPSNLT* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2210 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
Apr10g2210 334 MobiDBLite consensus disorder prediction 1 25 - -
Apr10g2210 334 Gene3D Classic Zinc Finger 128 151 - -
Apr10g2210 334 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 107 332 - -
Apr10g2210 334 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 18 97 - -
Apr10g2210 334 Gene3D Classic Zinc Finger 203 271 - -
Apr10g2210 334 Pfam Zinc finger, C2H2 type 129 150 IPR013087 -
Apr10g2210 334 SUPERFAMILY beta-beta-alpha zinc fingers 125 151 IPR036236 -
Apr10g2210 334 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Apr10g2210 334 SMART c2h2final6 178 211 IPR013087 -
Apr10g2210 334 SMART c2h2final6 128 150 IPR013087 -
Apr10g2210 334 SMART c2h2final6 216 238 IPR013087 -
Apr10g2210 334 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 18 97 IPR044300 GO:0010044|GO:0010447
Apr10g2210 334 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 107 332 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2210 Apr-Chr10 34519605 34521628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2210 101 276 C2H2 Transcription Factor Family AT1G34370 59.116 1.50e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr10g2210 zf-C2H2 0.00023 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2210 - - gmx:100809135 474.937