Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2196 ATGACTCAGCAAAATGTGGTAGTGTCTGACCCCAAATCCGGAGTTTCCTTATCAGTTTTCACAACACCACCACAAAAGCCACCGGCTGCACCAGGAGGGTACATTTCCATTTCTAGAAGGAGGGTTTTGAAGAACCTTGAAATCAATGGAGGACAAAGAATCAATGCATGGGTTGAGTCCATGAGAGCCTCTTCTCCAACCCATCTTAAATCCACTCCTTCTCTCTCTCAAGAACATACCTCTTGGACTCTTCACCATCCCTCGGCATTAGACATGTTTGACCAAATCATTGACGCGTCAAAGGGTAAACAAATTGTCATGTTTCTTGACTATGATGGCACGTTGTCCCCTATAGTTGACGACCCTGACCGTGCTTTCATGTCCGATTCGATGAGAAAAACAGTGAGAAAACTTGCAAGGTGTTTTCCTACTGCTATAGTAACTGGCAGATGCAAAGACAAGGTGTACAATTTTGTTCGTTTGGCAGAACTATATTATGCTGGAAGTCATGGCATGGATATTAAAGGGCCAACAAGAAGTTCCAAATACAACAGAGTGACTGAGACTGTTCTATTTCAAGCTGCCAGTGATTTTCTTCCCATGATAGATGAGGTGTACCAACAATTGGTTGATAAGACAAAATCAACTCCTGGAGCTATGGTTGAGAACAACAAGTTCTGCCTCTCTGTTCATTTCCGTCGTGTGGATGAAAAGAAATGGAGTGAATTGGCACGCCAAGTGAAATCAGTTTTAAAGGACTACCCGAAGCTTCGTCTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAAGCCCTGGAATTTTTGTTAGAGTCCCTTGGATTGGCCAATTGTAGTGATGTCTTTCCTGTTTATATTGGCGATGATCGATCCGATGAAGATGCTTTCAAGAAATTAAGAGACAGAGGACAAGGTTTTGGCATTCTTGTCTCCAAATTTCCAAAAGACACAAGTGCATCTTACTCGTTACAAGAACCCAACGAGGTGATGAACTTTCTTCAACGCTTGGTGGAGTGGAAACATGTGTCCCTGAGAGCACGTTCCCGGGTGTAA 1095 0.4329 MTQQNVVVSDPKSGVSLSVFTTPPQKPPAAPGGYISISRRRVLKNLEINGGQRINAWVESMRASSPTHLKSTPSLSQEHTSWTLHHPSALDMFDQIIDASKGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCKDKVYNFVRLAELYYAGSHGMDIKGPTRSSKYNRVTETVLFQAASDFLPMIDEVYQQLVDKTKSTPGAMVENNKFCLSVHFRRVDEKKWSELARQVKSVLKDYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGLANCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEVMNFLQRLVEWKHVSLRARSRV* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2196 364 TIGRFAM T6PP: trehalose-phosphatase 103 351 IPR003337 GO:0003824|GO:0005992
Apr10g2196 364 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 364 IPR044651 GO:0004805|GO:0005992
Apr10g2196 364 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 107 316 IPR006379 -
Apr10g2196 364 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 364 - -
Apr10g2196 364 CDD HAD_TPP 106 345 - -
Apr10g2196 364 Gene3D - 105 189 IPR023214 -
Apr10g2196 364 Gene3D - 208 362 IPR023214 -
Apr10g2196 364 SUPERFAMILY HAD-like 106 353 IPR036412 -
Apr10g2196 364 Pfam Trehalose-phosphatase 108 340 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2196 Apr-Chr10 34411557 34414375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2196 96 357 Trehalose Biosynthesis Gene Families AT1G06410 26.148 7.98e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2196 K01087 - gmx:100794430 677.552